| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2998 |
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| Symbol | |
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| ID | 4605245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3571165 |
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| End bp | 3572856 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782409 |
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| Product | GMC family oxidoreductase |
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| Protein accession | YP_928870 |
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| Protein GI | 119776130 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATTG TTGATCCTAT TTATGAAGGG CTGGCGTCGG GTTGGAAACA TCTGGACGGT
GCTCTGTATC AGGGCAGTGA TAAACCACAG ACCCTCGAAG CCGATGTGGT GATCATTGGT
ACGGGTGCCG GCGGCGGTGT GGCGGCCGAA ATCCTGACTC AGGCCGGGCT GTCGGTGATC
ATGGTGGAAA AAGGCCCACT GCGTTCCTCC CGGGATTTCG ATATGGAAGA ACGTACCGCG
TATCCCAATC TGTACCAGCA GGCCGCCGCC ATGAAAACCG CCGACAAGGC GATAGGTATC
TTTCAGGGCC GCGCTGTGGG CGGCTCAACC ACGGTAAACT GGACCACGTC CATACGTACT
CCCCCCGAAA CCCTGGCCTA CTGGCAATCT GAGTTTGCGG TACAGGGCCT GTCAGCCAAT
GAGCTTGAGC CCTGGTTTGA ACAGATGGAG TCCAGGCTCA ACATCAGTCA GTGGGCGTTC
GAACCCAATA GAAATAATGG CATGCTGCGC CGTGGCTGCG AGCAACTGGG GTGGGACTAC
ACAGTTATCA AGCGTAACGT GCTTGGCTGC TGGAATACCG GCTATTGCGG TATGGGCTGC
CCGGTTAATG CCAAGCAATC CATGTTGGTC ACCACTATTC CCGCGGCACT GTCGGCGGGG
GCAACCCTGT TGAGTCGTTT TGAGGCCACT CAGATAGAGC ATCATGCTGA CAAGGTCTTT
GGCATTTGGG TGCGGGCGCT GGACCAGAAT TTGGCTTTGA GGCCCGAAAA ACTCATGCTC
AAGGCGCGGC ACTATATTCT TGCCGGTGGC GCGATTCACA CCCCGGTGCT GATGATGCGC
TCCGGGCTTG CCGACCCCAT GCAGCTTTTG GGGAAACGTA CTTTTTTACA TCCCACGGTA
CTCTCGGGGG CCGTCTTTGA TGAGGCTATC AATGGCCACA GCGGCGCACC CCAGTCGATT
TATTCGGATC AGTTTGTCTG GCGAGATGGC GCAGCCGGTG AACTGGGTTA CAAGCTTGAA
GTGCCGCCCA TTCATCCAGT GCTGATTGCG TCCAAAACGT TGGGCTTTGG CAAGAGCCAT
GCGGAATTGA TGGCCAACTT CAATCAGCTT CAGGTGGTAA TAGCCCTGGT GCGTGACGGA
TTTCATTCCC AGAGCCAGGG CGGCAGCGTC GGTCTGGAAG GCAAGGGCTT TAAACTCGAC
TATCCGCTGA CTGAGCCTTT CTGGCGTGCG GCCAGAGCCG CCTTTGCCAG CATGGCCGAG
CTGCAATTTG CCGCCGGTGC CCGCAGGGTG CTGCCCATCA GTGAAGGCGT GGGCTATTTG
AATTCCTGGC AGGAGGCCAA GGCCGCCATT GCCGATATGT CGCTGGCGCC GCTCAAAACC
GTGGTGGCCT CGGCTCACGT GATGGGTGGT TGTCCCATGG GTGAAGATAA GACTAAGACC
ATGGTCGACA GTCTTGGCCA AAGCCACTAT CTGGAAAACC TGTCGGTGAT GGATGGCTCG
GTATTTCCAA CCAGTTTGGG GGCTAATCCG CAGCTGTCGA TTTATGGCAT GGTGGCTAAA
AACGCCACGG CTCTGGCGGG GCGTTTGGCG CCGGGGAGCA CACCGCCCCA AACAGCACCT
GATGCCGCCC CGAAGGCAGA TTTTGTGACG GAAACGGCGG CGCAAACTAT CTCTGCTGCA
GCACAGCCGT AA
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| Protein sequence | MAIVDPIYEG LASGWKHLDG ALYQGSDKPQ TLEADVVIIG TGAGGGVAAE ILTQAGLSVI
MVEKGPLRSS RDFDMEERTA YPNLYQQAAA MKTADKAIGI FQGRAVGGST TVNWTTSIRT
PPETLAYWQS EFAVQGLSAN ELEPWFEQME SRLNISQWAF EPNRNNGMLR RGCEQLGWDY
TVIKRNVLGC WNTGYCGMGC PVNAKQSMLV TTIPAALSAG ATLLSRFEAT QIEHHADKVF
GIWVRALDQN LALRPEKLML KARHYILAGG AIHTPVLMMR SGLADPMQLL GKRTFLHPTV
LSGAVFDEAI NGHSGAPQSI YSDQFVWRDG AAGELGYKLE VPPIHPVLIA SKTLGFGKSH
AELMANFNQL QVVIALVRDG FHSQSQGGSV GLEGKGFKLD YPLTEPFWRA ARAAFASMAE
LQFAAGARRV LPISEGVGYL NSWQEAKAAI ADMSLAPLKT VVASAHVMGG CPMGEDKTKT
MVDSLGQSHY LENLSVMDGS VFPTSLGANP QLSIYGMVAK NATALAGRLA PGSTPPQTAP
DAAPKADFVT ETAAQTISAA AQP
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