| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2989 |
|---|
| Symbol | |
|---|
| ID | 4605236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3559985 |
|---|
| End bp | 3561718 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639782400 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_928861 |
|---|
| Protein GI | 119776121 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTACGC GCGCTGTGTC ATTGCTGACA AGGATAATGT TACTGCTGAT GTGCGCCTCT
GCCAGCTCTC TGTGGGCATC AGAGCCCGGG CAAATTGCCG ACAGAACCAT TGAAGTGGGC
GAAGGAGACG TGGCGTTGAC AGAATTCGCC ACCGGCTATT TTGTCGACCC AAGCCAGCAA
ATGTCACTGG CGGAGGTACA GCTGCAGGAT TTTATCCCCG GCGGCAGCAG CATCACCCTG
GGCACCAATG CCAAGACGAC CTGGTCGCGG CTTGAGGTCC ACAATACTGC ATCTCACAGT
CGGCGCTTAT TCATCCATCA CCCCCACGCC TACCATCTGC AAAGCATCAA TTTCTATGAA
ACCCGCCAGA ATGAGCTGCT GAGCCAGGCC GATATTCACC TAGACAGGGA CGAGTCGCAC
CCCATGATGT TTGGCGGCAG CGCGGTATAT GCCTTTGACA TTGCCGCCGG CGAGCGCAAA
ACCATCTACA TCAAAAATGT GACCTTTTCT CACCAGTGGT ACAGCCTTGC GTTATACGAC
GAAGAGCATT CCAAACGAGC CTTGGTAGGC AGCGGTAACT ACATGGCACT GCTGGTTGGC
ATGATGTTGG CGCTGATGAT TTACAACTTC TTTTTATATC TGTCGGCCCG CAAAGTCGAA
AATGTGGTGT ATGCCCTTTA CCTCATTTCG GGCACCATCT GGGTGGGTTT GTCTTATGGG
GTGGCGGCCA ACTTTCTGGG CGTTTACAGC GCGGCCTTAT TGCAGCTCAA CTCAAACCTG
CTCAGCATGC CCAGCTTTTT GGTGCTGTTT ATGATGCTGA TTTTCGAGAC CCGCCGCCGC
TACCCCAGGG AGCATCTGGC GCTGAGCCTG ATGCTGACAC TCCTGGTTGC CGACTTTATT
TACAGTTTGT TTGATGTGGT CGGAGCCCTC AAGCCCGCCA GCAGCCTGGC GGCCATGATG
ATGGTGGTCA CCTTTGGTGT GTCATTGTCT TTGTGGCGTA AAGGTGAGCC CCTGGCCAAG
TATTTCCTGC TGGGACATTC GATGTTTATC ATCTTCAATA TGTCGGCCGT GTTTTATTAC
AAGGGCTTAA GTCAGGCCAA TCAAATCAAC AGTCATGGTG TCGGCATCGG CATTCTGCTG
GAAGCATTGA TGATGGCCTT CATCCTGTCG TACCGGATTA AAACCCTTGA GCAACTCAAG
GCCAAACAGG GGGAGCTGAA GCGCCAGGCA AACACAGATC CCATGACGCA CCTCTTTAAC
CGACGCTACT TTGATGTGAC CAGCCCGCTC TTGCTGACCG AGGCCAAAGC GACAGGCGCC
CACTGGACCC TGTTGATCAT CGACATAGAT AATTTCAAGT CCATTAACGA CACCTATGGT
CACCATGTGG GGGATCTGGT GATAATCGAA TTCGCCGCCG TACTCAAACA AAACCAGCGA
CCTCAGGATA TCGCCTGTCG CTTCGGTGGT GATGAGTTTG TGTTGCTGCT CAACTGCAAT
TTGGACAACG CCACCCGCAT TGCCGAGCGC ATCCGTGCGA ACACCGAAAG GCTGCCGATA
ACCACTCAGG AAGGTGAAAA GCTGCACTTC ACCGTGAGTA TTGGGGTGCA TCCTGTATCA
TCCAGCGCTG ACAACATGCA AGAAGCGCTG CAGGGCGCCG ATGCCGCTTT GTATGAGTCC
AAGGGGCTTG GACGCAACAA GGTGGTCAGT CGCTTGAACG GCTCAGCGGC ATAG
|
|---|
| Protein sequence | MLTRAVSLLT RIMLLLMCAS ASSLWASEPG QIADRTIEVG EGDVALTEFA TGYFVDPSQQ
MSLAEVQLQD FIPGGSSITL GTNAKTTWSR LEVHNTASHS RRLFIHHPHA YHLQSINFYE
TRQNELLSQA DIHLDRDESH PMMFGGSAVY AFDIAAGERK TIYIKNVTFS HQWYSLALYD
EEHSKRALVG SGNYMALLVG MMLALMIYNF FLYLSARKVE NVVYALYLIS GTIWVGLSYG
VAANFLGVYS AALLQLNSNL LSMPSFLVLF MMLIFETRRR YPREHLALSL MLTLLVADFI
YSLFDVVGAL KPASSLAAMM MVVTFGVSLS LWRKGEPLAK YFLLGHSMFI IFNMSAVFYY
KGLSQANQIN SHGVGIGILL EALMMAFILS YRIKTLEQLK AKQGELKRQA NTDPMTHLFN
RRYFDVTSPL LLTEAKATGA HWTLLIIDID NFKSINDTYG HHVGDLVIIE FAAVLKQNQR
PQDIACRFGG DEFVLLLNCN LDNATRIAER IRANTERLPI TTQEGEKLHF TVSIGVHPVS
SSADNMQEAL QGADAALYES KGLGRNKVVS RLNGSAA
|
|---|
| |