| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2988 |
|---|
| Symbol | |
|---|
| ID | 4605235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3559083 |
|---|
| End bp | 3559709 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639782399 |
|---|
| Product | L-lysine exporter, putative |
|---|
| Protein accession | YP_928860 |
|---|
| Protein GI | 119776120 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1279] Lysine efflux permease |
|---|
| TIGRFAM ID | [TIGR00948] L-lysine exporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAACCG CATTCGTTCA GGGGCTGGCC ATAGGCGCCA GCCTGATCAT CGCCGTCGGC
GCCCAAAACG CCTTTGTCCT CAAGCAGGGG ATCATGCGCG CCCACAGCCT GCCCATTGCT
TTGACCTGCT CGCTGATTGA TGCGCTGATG ATTGCTGCCG GTGTGGCCGG GCTGGGCTCA
CTTATCCTGG CGTTTCCCGC CCTGAAACAT GGGGCAACCT TCGGCGGCGC TGCCTTCCTG
CTGTGGTATG GCACCAATGC CCTGAAGGCC TCCTTCAGCG ATAAGGAAAT GGACTTGTCC
AAGGCGACAG GCGCAGGCAG TCTCAAGGCG GCGTTGATGA CCACTCTGGC CATCAGTTTT
TTGAACCCGC ACCTGTATCT GGATACCGTG GTGCTGCTGG GCTCCATCAG CACCCAGTTC
AGCGGTGAAG CCCGGCAATG GTTTGGCGCA GGCGCCATTC TGGCATCCTT TCTGTGGTTC
TTTACCTTAA GCTTTGGCGC CAGACTCATG GCCCCTATGT TTGCCAGGCC CGCAGCCTGG
CGCTATCTGG ATCGCTTTAT TTTTGTGACC ATGTACGCCA TTGCCATCGC GCTGCTATGG
CCCTACGCCA AGGCGCTGCT GGTCTGA
|
|---|
| Protein sequence | METAFVQGLA IGASLIIAVG AQNAFVLKQG IMRAHSLPIA LTCSLIDALM IAAGVAGLGS
LILAFPALKH GATFGGAAFL LWYGTNALKA SFSDKEMDLS KATGAGSLKA ALMTTLAISF
LNPHLYLDTV VLLGSISTQF SGEARQWFGA GAILASFLWF FTLSFGARLM APMFARPAAW
RYLDRFIFVT MYAIAIALLW PYAKALLV
|
|---|
| |