| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2973 |
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| Symbol | |
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| ID | 4605220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3542699 |
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| End bp | 3544903 |
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| Gene Length | 2205 bp |
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| Protein Length | 734 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782384 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_928845 |
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| Protein GI | 119776105 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATTGC CTGAGTTAAA CCCGCTGCAT GCTGCACTGG CAGGGATATT CACGGATGTC
CCGCTGGTAA CGCTGGAACA GAATGTCGAT CGCGCGCTGC AAACCATGAC GGCGAAGCTC
GACTGTGATG GCGTGTTTGT GCTCTCTGCC TCGACCCGGC AACCCGGTGT CACCCCCCGC
AATATTTACC TCAAACCCGG CAGCGTGCCG AACAATCAGG TGCGCCACTG GCCGCTGGCA
CGTATGCCGT ATTTCAGACG TTTAATGCGC CAACCCAGGC TCCTTAATGT GCCCGACATC
GCCAGGCTGC CCTCAGAGGC GGCTGAAGAG AAGCGCTTTT TACGGGAGTG GCGGGTAAAG
AGCCTGTTGG TGCTCACGCC GGTGCATTTT GGTGAAACCC AGATTGCCCT GGGGGCCGTT
AATTGCGAAC GTGCCAGAGA GTGGTCGCAG GCCTTTATGG ATGAGCTTGG CATTGCAGCC
ACCCTTATCT GTGCCGTGAT GGAGCTGACC CGTATTGCCC AGGCTTTGAC CGTGAGCGAG
CGCCGCTATC AGGAGCTGTT CAATCAGTTG CCGCTGGCCT GTGGACTGGT GGACAGACGT
AACAGGGTAA AGCTGTTAAA CAGCATAGCC CGCCAGAATC TGCCGGTGAG CGATGGACAG
GACCTGCTGG CATTGGTAAG GCCGGAGGAA GAGGCCATGC TGCAGGATAC GCTGCAGGTG
GTGCGCGATG GGGTGTTGAG TCAGGCCTGG TGCGAGATTT CCATGAAGGG GCCGCTGCTG
AATCAGCAAT GGATAAAGCT GAGTTTCAGC ACCATGTCAG ACGACCCGGG GACCTTACTG
ATGCTGGCGG AAGACGTGAG TGAGCGCCAC CGGCTTGCCG ATGAGCTCTC ATTTCATGCC
AATTACGATG CCCTCACCGG GCTGCCAAAC CGTTCCCATT TCGAGGCCGT GCTCGACAAA
CTCCTGCAGC AAATACCGGA AGAGCCCATT TGCGTGGCAT TTCTCGATTT GGACCAGTTT
CAGGTGATCA ACAATGTCAG CGGTCATCAG GCCGGTGACA AGCTGCTGTG TCAGGTTGCA
CTGAGGCTCA AGCAGTTGGT GCGCAAAGGG GATACCGTGG CCCGCCTCGG CGGCGATGAA
TTTGCCATCC TGATGCACTA CTGCAACGAG GATACCGCCA AAGTCATTGC CCAGCGCATT
TGTACTCAAT TGTTTGAACA CGAGTTTTAC TGGGAACACC GGCGTCACAA TGTGTCAGTT
TCCATGGGGG TTGCCCCCCT CGATGCCGGG GTCAACGATA TTTATGTGCT GATGAGCCGT
GCCGATGCGG CTTGTCGGCT CGCCAAGGAA CAGGGGCGCA ATGGCTGGCA TATCTACTGT
GCCACCGACC CGAAAATGAA CCGGCTTTAC AGTGAGATGA CCGCCTCGGT GGACATCATA
GATGCCCTGT CGCAAAACCA GTTTCAGCTT TACTATCAAC TTATTGAGCC GCTTTTGAAC
GAGCAGGCCG GTATTCATAT GGAAATACTG CTTCGTCTCC AGCGGCCCGA TGGCAAGATG
TTGTCGCCGG GGCTGTTTTT ACCCGCCGCC GAGCGGTACA ACCTGGCATC CAGGGTAGAC
CGATGGGTGA TAGACAACCT GCTGCGCTGG GGCGGCAATC ACCTGGCGTT GTGGCAGGAG
CTGGACATGG TATCGGTCAA TCTGTCTGCC AATTCCCTCA GCGACCAGGA GTTTATGGAA
TGGCTCGAGA TACGGCTGAT GGCCGAGCCT GAGCTGGTGA GTAAACTATG TTTTGAAATC
ACCGAAACGG CGGCAGTCAG CCAGCTTGAA CAGGCCCAGG CCCTGATTGA GCTCTTGCGG
CCCCTTGGCT GTAAACTGGC GCTGGATGAC TTTGGTTCGG GCTTTTCAAG CTTTGCTTAC
CTGAAGCTGC TTGATGTGGA CTTTGTCAAA ATCGACGGGC AATTCGTGGT GAACCTCTGC
GACAACAAGT CCGATCAAGC CATCGTCAAT GCAATCTGCC AGCTGGGCCG TGATATGGAC
TTCGACGTCA TTGCCGAGTT TGTGGAATCT GAGGCGGTGG GGCTGCGCCT GCGTGAGCTG
GAAGTGGACT ATGCCCAGGG CTATGCCATC GGCAAGCCGG AGCCGCTGGA TAACCTCAGC
AGTGGCAAGC GCGTCCCCTG GCTTAGCGAC TTAACTACTG GTTGA
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| Protein sequence | MSLPELNPLH AALAGIFTDV PLVTLEQNVD RALQTMTAKL DCDGVFVLSA STRQPGVTPR
NIYLKPGSVP NNQVRHWPLA RMPYFRRLMR QPRLLNVPDI ARLPSEAAEE KRFLREWRVK
SLLVLTPVHF GETQIALGAV NCERAREWSQ AFMDELGIAA TLICAVMELT RIAQALTVSE
RRYQELFNQL PLACGLVDRR NRVKLLNSIA RQNLPVSDGQ DLLALVRPEE EAMLQDTLQV
VRDGVLSQAW CEISMKGPLL NQQWIKLSFS TMSDDPGTLL MLAEDVSERH RLADELSFHA
NYDALTGLPN RSHFEAVLDK LLQQIPEEPI CVAFLDLDQF QVINNVSGHQ AGDKLLCQVA
LRLKQLVRKG DTVARLGGDE FAILMHYCNE DTAKVIAQRI CTQLFEHEFY WEHRRHNVSV
SMGVAPLDAG VNDIYVLMSR ADAACRLAKE QGRNGWHIYC ATDPKMNRLY SEMTASVDII
DALSQNQFQL YYQLIEPLLN EQAGIHMEIL LRLQRPDGKM LSPGLFLPAA ERYNLASRVD
RWVIDNLLRW GGNHLALWQE LDMVSVNLSA NSLSDQEFME WLEIRLMAEP ELVSKLCFEI
TETAAVSQLE QAQALIELLR PLGCKLALDD FGSGFSSFAY LKLLDVDFVK IDGQFVVNLC
DNKSDQAIVN AICQLGRDMD FDVIAEFVES EAVGLRLREL EVDYAQGYAI GKPEPLDNLS
SGKRVPWLSD LTTG
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