| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2956 |
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| Symbol | |
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| ID | 4605203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3518305 |
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| End bp | 3520923 |
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| Gene Length | 2619 bp |
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| Protein Length | 872 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639782367 |
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| Product | putative ABC transport system permease protein |
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| Protein accession | YP_928828 |
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| Protein GI | 119776088 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.410151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAGGC AACATCGAGC GAGCACCAAT CATGGCCTGA GGCTGAGCCT CAAGGTGTTT
GTGGGCCATT ACCGCCGGGC GCCGCTGCAG GCCGGGGCTA TTTTGCTGGG CATTATCCTC
TCTGTGGTGC TGCTCACGGC CGTCAAAAGC ATTAATGAAA ATGCCCGAGC CAGCTATCGC
GAAGCCACGG CGCCCCTCTC TGGCCGCGCC GCCTTTACCC TGCTGCCGGC AGGCGGCGCC
GCGTTTATCA GCGATGACAT TTATTTTCGG CTTAACCGCC AGGGCCTTAA GTTAATTCCC
AGGTTAAATG GGGTCATCAC CGATGACAAC GGCAGACGTT TTTATATCGA CGGTATCGAC
ATCATAGCCG CCACCTCTGC GGCCATAACC GCGGCGAGTT CCAGTCCTGA CACCCAACGC
CCTGAGCCCC CCAGCGCATC GGCCAACTCC GGCAGCCCCC TCTTCGCCAA CCTTGACCTG
GCAAGCCTGC TCAGTGGCGA GCCGGTGTTG GTGCTAAGCC AAAACCACCT CGAAAAGATT
AAGGCCGCAG GCGACATCAC CCTCAACGGC AAGGGGATAA CCCTGATGGG GTTGGATGAC
AGCTATAGTC TCGGCAGCGC CATGGTGGCC GACCTGTCCT TTGCCAAGGC GGCGCTGAAG
GCGCCCAATG CACTGAGCAG CATCGAAGTG CTGGACAGTG TCAGTCTTAG CGCACTCAAG
CAGCATTTAC TGGATGCCGG AATCGATGCC TCCAGGCTTG AAATCGTCGC CGAAGATAAT
GGTGCGGCGC TCACCGAACT GACCGGCAGC TTCCATCTAA GCCTCAAGGC CATGGGACTG
CTCGCCTTTG TGGTGGGCTT ATTTATTGCC TATAACGGCG TGCGCTACAG CCTGATGAAG
CGCACCCGGC TTTTATTGCA GCTGCGCCAG CTGGGCGTGG GGCAACGGGA ACTGCTTGGT
GCCCTGACGC TGGAGCTGAT GCTGATGGTG AGCCTCGGCG CCGCTGCGGG GTTTGTGCTG
GGGCTTTGGC TTGGGCAGGT GCTGATGCCA CTGGTGGCCA TGACGTTGGA GCAAATCTAC
GGCGCGCGCC TCTTGCCCGG CCACTGGCAG CCCGCCTGGT TTATCGAGGC CTTTGGCCTG
ACCGCCGCCG CGAGTCTATT CGCCTGTATC CCCTTGATGG CGCGGTTGGT GGCCACGCCG
CTCGCCAGCA GTCGTCAGCA GGGGGCGAGC CAGGGCTTCG ATACCCGGAT GCAGCGGCTG
CAGCTCAAGG TGGCTGCGGT GCTGTTGCTG CTGGCGCTGC TGATCACCCT GGTGGAACCC
GAAGTCAGCC ACTATCTTCG CGAGCAGCAA CTGCCGCGGC TGTTGCCTAT GTATAGCCTG
GGGCTGATTG CACTGGTGAC CCTGGCAACG CCGCTGCTTT TACCCAGCCT GCTGGCACGG
CTGCCCGCCG TTTTCACCGG GTTTGGTCTC TTCAGGCCGG GGCTGTCACA CTATTTGGTC
GCCGAGCTGA AGGTGCTGGC GCCGCCCATG TCGCTGGCCA TGATGGCCAT GCTGCTGGCG
CTGTCGGCCA ATATCGCCAT GACGACCCTG GTGGGCAGTT TCGAAGGCAC CTTGAAGGCC
TGGCTCAACC AAAGGCTGCA TGCCGATATT TACTTAAGGC CCGGTGACAG CCGCATGCAG
GAGGTCATGG CAAAACTCGA AGGCGACAGC CGCATCAGCG CCAGCTACCG CCAGTATTCC
AGCCCAGCCG TGCTCACGGG CCAGGGTAAT AGCGACACCC GTTTCCGGCT GCTGGCACGG
GATAGCCTGT CGGTTCGGGA AACCAGCACC TTAAAGCTAT TTGATGAGGC GCTGTGGCAA
GCCATGGCGC AAGGCGGCAG GCAGATTCTG GTGAATGAGC CCATGGCACT GCGGCTCAAT
ATTCAGCTTG GGGATACCCT GCATCTGGCG GTTGGCGGCC AACGCCTGAG CCTGGCGGTT
GCCGGCATTT TTTACGATCA TGGTAATCAA CAGTTTGAAA CCCTTATCGA GGAAGACCTC
TGGCGTGAGC TGGGGCTGTC CCCCATTCCC ATGAGTCTCG CGCTCAGCTG TGGCGATTGC
GATGCCGAGC AGCTGGCCAA TGACCTAGCC GGTGAGCTTG AGCTGTCACG CTCGCTGATA
TTCAGCCAGC AAAACATCAA AAAAATTGCC ATCACCATGT TTGGTCGCAC CTTTGAAATC
ACCGCAAGCC TGGGCACCCT CACCCTGCTG GTAGCCTCCA TCGGCCTCTT CTCGGCGCTG
TCCATGCTCT CCGCCAGCCG CGAGAACCCG CTGGCGCGGC TGCACGCCCT GGGGGTGAGT
CGCCGCGAGC TGCTGTTAAT GAGCGCTGTG CAGATGTTGC TGATGGTGCT TGCCACGGCA
CTGCTTGCGG TGCCCGTTGC CTGGATACTC GCCTGGCTAT TGATCCACAA GGTCATTTTG
CTGTCATTCG GCTGGAGCCT CACCATGGAC TGGCAATGGC TGCCGGTACT GAGTGCCATA
GGTGCGGCGC TGCTGTCGGC CTCGCTGGCC CTCGCCTGGC CCCTGTGGCG CCAAAGCCGC
CGCCCGCTTA TCCGCAGTTT GCAGCAGGAG GCGAATTGA
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| Protein sequence | MDRQHRASTN HGLRLSLKVF VGHYRRAPLQ AGAILLGIIL SVVLLTAVKS INENARASYR
EATAPLSGRA AFTLLPAGGA AFISDDIYFR LNRQGLKLIP RLNGVITDDN GRRFYIDGID
IIAATSAAIT AASSSPDTQR PEPPSASANS GSPLFANLDL ASLLSGEPVL VLSQNHLEKI
KAAGDITLNG KGITLMGLDD SYSLGSAMVA DLSFAKAALK APNALSSIEV LDSVSLSALK
QHLLDAGIDA SRLEIVAEDN GAALTELTGS FHLSLKAMGL LAFVVGLFIA YNGVRYSLMK
RTRLLLQLRQ LGVGQRELLG ALTLELMLMV SLGAAAGFVL GLWLGQVLMP LVAMTLEQIY
GARLLPGHWQ PAWFIEAFGL TAAASLFACI PLMARLVATP LASSRQQGAS QGFDTRMQRL
QLKVAAVLLL LALLITLVEP EVSHYLREQQ LPRLLPMYSL GLIALVTLAT PLLLPSLLAR
LPAVFTGFGL FRPGLSHYLV AELKVLAPPM SLAMMAMLLA LSANIAMTTL VGSFEGTLKA
WLNQRLHADI YLRPGDSRMQ EVMAKLEGDS RISASYRQYS SPAVLTGQGN SDTRFRLLAR
DSLSVRETST LKLFDEALWQ AMAQGGRQIL VNEPMALRLN IQLGDTLHLA VGGQRLSLAV
AGIFYDHGNQ QFETLIEEDL WRELGLSPIP MSLALSCGDC DAEQLANDLA GELELSRSLI
FSQQNIKKIA ITMFGRTFEI TASLGTLTLL VASIGLFSAL SMLSASRENP LARLHALGVS
RRELLLMSAV QMLLMVLATA LLAVPVAWIL AWLLIHKVIL LSFGWSLTMD WQWLPVLSAI
GAALLSASLA LAWPLWRQSR RPLIRSLQQE AN
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