| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2952 |
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| Symbol | |
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| ID | 4605199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3509199 |
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| End bp | 3514490 |
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| Gene Length | 5292 bp |
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| Protein Length | 1763 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782363 |
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| Product | sensory box histidine kinase/response regulator |
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| Protein accession | YP_928824 |
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| Protein GI | 119776084 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.684028 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.230032 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGAAA ATACCGAAAA ACTCTCAACC TTTCGAAGCC GGATCCTGTT CCAGATAGCC
GTTCCCCTGA TCATTATCAT GACCGGGGTA TCCGGGGTCA CTGGTTGGCT GAACTACAAG
GCCGAAGAAA AAGCCTTTTT TGCTGACCTG GCTGAAAAAG CAGATTTTGC CGCCAAGCGT
CTCGAGTTTG AGTTGACGCT GGCCCAGCAG GATACCCAAA CCCTCGCCTT TACCCTTGGG
CACCTCGATG CCAAAGCGCA ATTGCAACAG GCGCCCTTTC TGTACCAATT ACTCACCGAT
CGCCTGGCTC GAAACGACAG TTTTTATGGC TCGGCCGTCG CCTTTGTACC GGGTTTTACG
CCCGGACAGG AACGATTTGC CCCCTATGTG TTTCGTCAGG ATTTGACGAT TGCCACCCTG
GATATAGGCA AAGAAGCCTA TGACTACACC AACGGTGAGT GGGACTGGTG GACGGAAGCC
CTCAAACGCC CCAAGGGGTA CTGGACTGCT CCCTACTACG ACGACGGCGC TGGCAACATT
CAGATGATCA CCTTCTCCCA GCCCTTTGGT GATGAGGAGC CGCTTGGGGT AGTGACCACG
GATCTGGCGC TGTCCAGTTT GCCCATCCGT CTGGGTATCG ATCCCAAAAA GCTGTTGGTG
CTCGATGCCA GGGGCACGCT TATTTACCAT CCCGACAACA ACCTGACCCG TAACGCCACC
ATCAGCGACT GGCTGGTGAA AGATGTCGCC AGCGAGGAAG CCGCCAAAAA AGTGCTTGAG
GGTGAGGCTC AGGAAGTCGC CCTGAAAGAT CTGAACGGCG TTCAGTATCT GGCCAGTATT
GCCAAGGTGT CGCCACTGGC ATGGCGGGTA TTGGTCATCA CGCCCCAAAC CGAATTGGTC
GAAACTTTCT TAAAAGGATT CAGTTCCTTA ACCTTGAGCC TCCTGGTACT GGCTTTGATT
CTGCTGGTGA CCAGCTATTA CAGTGCCAAG CGCCTGACCG AGCCCCTGGA AGCCCTGGAA
ACCGGTATTG TCGACTTCAG TAAGGGACTT ATCAAACGCT TGCAAAAACC CGAGGGGGTA
GTGCGGGAAA TCGCCACGCT GAGTCATAAG TTCAACGAGA TGGCCGAAGT GCTGGAAGAG
CGGGAACAGG CGCTGCTGGA CTCCCGCGGC AACCGTTTTG CCACCCTGAT AGACGGCATG
AGCGACAAGT CGTTTTATTG CTCCATGACC CCAGACGGCA ATATCGACCA GGTCAGTGCC
GGGGTAGAAA AGGTGCTGGG GATTTCGCCG GAAGTGCTGA AACGCAAGTA CCAGCGCCTC
TTTTCCAGCA ACGCCATCAA CGAGCAAAAC TGGCAGTTTA TGGAGATGGC GCTGCGGGGC
GAGGCGGTTC CTCCCCATCA GGTGGAAATG GCCGGCGCCG ATGGCAGCCT CAGGCGGCTC
GACCTCTTTA TGCAGCCGCT TTTGGATGAT GAAGGACAGC TGATCTCCGT GGAGATGCTG
TTTAACGATG TGACAGAGCA GTTTTCCGCC GCCGCCTGGT CCAATGCGGT GCTGGAAGCG
GCCCCCGAAG CCATGCTGAT AGTGGATGAA TCGGGGCAAC TCGTGTTCAG TAACAGTCGT
TGCCAGGAGC TGTTCGGTTA CAGCGGCGAG GAAATGCTGA ACCTGAACAT AGATGCGCTT
ATTCCCGAGA ATGAGCGCCA TGGCCATCAG GGCAAGCGCC AGCTCTTTAT TGAAGGTGGC
AGAGACAAGG TGATGGCCAA TGGTAAGCCG CTGCATGCTC TTAAATGTGG CGGCGAGCAG
TTTCCGGTGC AAATTGGCCT GAGTCTGTTG CCCGCCGACA GTCGGGGTCA GCGTCAGGTG
GCGGCCTCCA TTCGCGACCT GACAGAGCAA TTGGCGGTCG AGCGCCAAAT CCGCGAGAGT
GAGAGCCGCT TTCGCGGTTT GGTGTCCAAT ATCCCGGGCG CTGTGTATCG CACCCGCATT
AATGGCACCT GGACCATGGA ATATGTCAGC GACAACATCA CTGAGCTGAC CGGGTACCCT
GCCTGGCACT TTATTGAGAG CAAAAAGCGC AGCTTTGGTT CGCTAATCCT TGATGAGGAC
GCAGAGCGCT GCGACGCGAT TATTTCCGGC GCCCTCGCTG AGCAGCATGC CTTTGAGGTG
GAGTACCGCA TTCGCCACCG GGATGGCAGC CTTCGCTGGG TCCATGAAAA GGGCAAGGCA
AGCTACGATG AAGACGGCAA TCCGGTGTGG TTTGACGGCA GCCTGAATGA CATCACCGAG
AGCAAGCTGG CTCAGGAGCG AATTGAGCAA TCACGGGAGC AGCTGGAAAC CATCACCGAG
TCTGTGCCCA GCACTGTGTA CCAGTTGGTG TGGCGCTCTG AGCGTGACAG ACGCTTTACC
TTCCTCTCAA GCGCGGCCAT GGCGACCCTG GGTTTCCATC GCAATGAGGT GCTGGATAAC
TTCGAGCTGG TGGCCGAGCG CATCGTGGAA GAAGACAGGG GCGAGATCAT TCAAATGCTC
GCCGGTCGTC ACGGCATGCA GTGGACCAAG GCCTTCAGAT ACCATTTCCC TTCCGGTGAG
TTGCGCTGGC TGGAGGCGGG TGCCCGGGGC AGCAAGCAGC AGGATGCGTT GGTGTGGAAC
GGGTATCTGA TGGACATCAG CGGCCGTAAA CGCATGGAGA CTGAGCTAGC CCAAAGCGAG
GCCCACTTCA GGGCACTGTT TGATAACGCC GGTATCGGCA TTGTTAACCT TGACGACAGG
GGCATTATCA AGGATTGCAA CGGCCAGTTT GTCAGTGATT TGGGCATAAG CAGCGACAGC
TTGAAGCGTA AGCAGCTGGC GGACCTGATG CACCCAGAGG ACAGAGCACT TGCCACTGGC
CTGTATCAGG CCCTGGCTGA GAGTGAGCAG GGCAGTATCA GCGGTGAGTG GCGCATGCTC
GATGGCGATG GCGAGCTGAT GTGGATGGCG GTGATTGCTT CTGTGCTGGA AGAAGGCGAC
GGCGGTGAGC GCTCCGTGGT GATGAGTATC GCCAATATTA CCCGCCTCAA ACTGCTGTCC
GACGAGCTGA TGGCTGCCAA GGAGGATGCG GATGCGGCCA ACCAGGCCAA GAGCGATTTC
CTCGCCAACA TGTCCCACGA AATCCGCACC CCCATGAATG CCATCATTGG TATGTCACAG
CTGTGCCTGC AGACTGAGCT CGACAGAAAG CAGCGCAACT ATGTGGAAAA AATCGAGCGG
GCGTCCAAGT CGCTCCTCGG TATCATCAAC GACATCCTCG ATTTCTCGAA AATTGAAGCT
GGTAAACTGG ATATCGAAGT GGTGCCCTTC CAGCTGGACA CCATTTTGGA AGACCTCGGC
GACATGTTTT CGGTGAAAGC CGCCGATAAG CAGCTGGAGC TGCTGTTTTC GGTTGCCCCC
GGCGTGCCAA CACACCTTGA AGGTGACCCG CTGCGTCTCA GCCAGGTGCT GATTAACCTG
ATGAATAACG CCATTAAATT CACTGAACGC GGTGAGGTGA TGTTGTCCAT CAGCGAGCTG
GCCCGGGATG AGGATCAGGT GCAGCTCAAG TTTGCCGTGC GCGACAGCGG CATAGGGCTC
ACCGCAGAAC AACAGGCCAA GCTGTTTAAG TCATTCAGTC AGGCAGATAC CTCCACCACC
CGCAAATACG GCGGCACCGG TCTTGGGCTG GCCATTTGCA AACAGCTGGT GGAGCTGATG
GGCGGCGAGA TTGGGGTCGA CAGCCAGTTT GGCAATGGCA GTACCTTCTA TTTCACTGTG
TCGGTCAAGG TGGCGCAAAA CGCCCAGTTG AATGTTGAAC AGGAACTGGA AGGCATGGCG
GTGCTGGTGG TAGACGACAA CAGCACCGCC AGAGACATTC TTCGCACCAC GCTGCAAAGC
ATGGGCTTTT CCGTCGACAG CGCCCGCAGC GGCATGGAGG CATTGGAGAA GTGTGCCGAG
CGGGATTACC GCATCGCCCT TATCGACTGG AAAATGCCCG AGATGGATGG CACTGAAACC
GCGGCACGGA TGCGGGAACT CAAGCAGCCG CCCCTTATTC TGATGGTTTC TGCCCATGCC
AACAGCGAGT TTATCGACAA GGTGGAGGAG ATGGGCATCA ATGGCTACAT CACCAAGCCC
ATCAGCGCTT CCCGTTTGCT GGATGGCATC ATGTCGGCGC TGGGTCGTCA GGGACACAAA
CCCGTGCGGC GCAAGGCGCA GCCCATGGAT GCCCAGAAAC TGTCCGGCCT CAAGGGCAAA
CGTATCCTGC TGGTGGAAGA CAATGAGATG AACCAGGAGG TGGCCAGTGA GTTTTTGGAG
CAGGTGGGGG TGGTGCTTTC CATCGCCGAC AACGGTCAGA TTGCGCTGGA AAAACTCGGT
CAACAAAGCT TCGATTTGGT ACTGATGGAT TGTCAGATGC CGGTGATGGA TGGTTATCAG
GCCACCCGGG AGCTGAGAAA ACTGCCCGGG CTTGCGGAGC TCCCCGTGGT CGCCATGACG
GCCAACGCCA TGGCTGGCGA TAAGGAAATG TGTTTGCTCG CGGGGATGAA CGACCATATC
GCCAAGCCCA TTGAGGTGGG GATCCTCTAT CAGACCCTGC TGCAGTATCT CTGCCCCGAG
GCCAAAGGGC TGGAGTCAGC AGACGCTGAC GCCGCGGCAG ACCAGGAGGT GACATCGCTC
ACCAGCTGGC CTGAGCATGA AGATTTGGAC ATCGACCGGG GATTGCAGTT GGTACAAAAC
TCAGAGCGCC TCTATCGCCG CATTCTGGAG CGTTTCGTCA CCAGCCAGGC CCAGGCAGGT
AAGAAAATCC GCAAGGCCCT TGCACTGGGA CAGCAGGAAG ATGCCGTTCG TTTGGCCCAC
ACCCTCAAAG GCGTGGCGGG CAACCTCAGC GCCGACACCC TGGTAGAGGA GGCCCGACAA
CTCGAGGCCA AACTCGCACA GGGAGAGGCC TGCGAGGCCG AGTTGGAAGC GGTGGAAACC
CGGTTGGTAA CCATAGTGGC AGCCATCGAA CGTTGGATGA CAGAAGGTGT TGAAGAGCAG
GGCGTGGAGA GTGGTGAGCC TTTGTCTGCG GACGCCCTTA AAGAGGTGCT CAATACCCTG
GTGACACAGC TTGAGGACGC CGACGCCGAT GCGGTGTCGA CCCTTGAGTC GCTCTCTGGA
CAAGTGGTAG CGGGCATATG GGCCAGGCTT AAGCCGGTAA GCCAGATGGT GGCGGGCTAC
CAGTTTGATG ATGGCGCCGA TTTGGTGCGG GAACTGATAC AGGAACTTGA GACCGACGGC
GAATCCGCCT GA
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| Protein sequence | MQENTEKLST FRSRILFQIA VPLIIIMTGV SGVTGWLNYK AEEKAFFADL AEKADFAAKR
LEFELTLAQQ DTQTLAFTLG HLDAKAQLQQ APFLYQLLTD RLARNDSFYG SAVAFVPGFT
PGQERFAPYV FRQDLTIATL DIGKEAYDYT NGEWDWWTEA LKRPKGYWTA PYYDDGAGNI
QMITFSQPFG DEEPLGVVTT DLALSSLPIR LGIDPKKLLV LDARGTLIYH PDNNLTRNAT
ISDWLVKDVA SEEAAKKVLE GEAQEVALKD LNGVQYLASI AKVSPLAWRV LVITPQTELV
ETFLKGFSSL TLSLLVLALI LLVTSYYSAK RLTEPLEALE TGIVDFSKGL IKRLQKPEGV
VREIATLSHK FNEMAEVLEE REQALLDSRG NRFATLIDGM SDKSFYCSMT PDGNIDQVSA
GVEKVLGISP EVLKRKYQRL FSSNAINEQN WQFMEMALRG EAVPPHQVEM AGADGSLRRL
DLFMQPLLDD EGQLISVEML FNDVTEQFSA AAWSNAVLEA APEAMLIVDE SGQLVFSNSR
CQELFGYSGE EMLNLNIDAL IPENERHGHQ GKRQLFIEGG RDKVMANGKP LHALKCGGEQ
FPVQIGLSLL PADSRGQRQV AASIRDLTEQ LAVERQIRES ESRFRGLVSN IPGAVYRTRI
NGTWTMEYVS DNITELTGYP AWHFIESKKR SFGSLILDED AERCDAIISG ALAEQHAFEV
EYRIRHRDGS LRWVHEKGKA SYDEDGNPVW FDGSLNDITE SKLAQERIEQ SREQLETITE
SVPSTVYQLV WRSERDRRFT FLSSAAMATL GFHRNEVLDN FELVAERIVE EDRGEIIQML
AGRHGMQWTK AFRYHFPSGE LRWLEAGARG SKQQDALVWN GYLMDISGRK RMETELAQSE
AHFRALFDNA GIGIVNLDDR GIIKDCNGQF VSDLGISSDS LKRKQLADLM HPEDRALATG
LYQALAESEQ GSISGEWRML DGDGELMWMA VIASVLEEGD GGERSVVMSI ANITRLKLLS
DELMAAKEDA DAANQAKSDF LANMSHEIRT PMNAIIGMSQ LCLQTELDRK QRNYVEKIER
ASKSLLGIIN DILDFSKIEA GKLDIEVVPF QLDTILEDLG DMFSVKAADK QLELLFSVAP
GVPTHLEGDP LRLSQVLINL MNNAIKFTER GEVMLSISEL ARDEDQVQLK FAVRDSGIGL
TAEQQAKLFK SFSQADTSTT RKYGGTGLGL AICKQLVELM GGEIGVDSQF GNGSTFYFTV
SVKVAQNAQL NVEQELEGMA VLVVDDNSTA RDILRTTLQS MGFSVDSARS GMEALEKCAE
RDYRIALIDW KMPEMDGTET AARMRELKQP PLILMVSAHA NSEFIDKVEE MGINGYITKP
ISASRLLDGI MSALGRQGHK PVRRKAQPMD AQKLSGLKGK RILLVEDNEM NQEVASEFLE
QVGVVLSIAD NGQIALEKLG QQSFDLVLMD CQMPVMDGYQ ATRELRKLPG LAELPVVAMT
ANAMAGDKEM CLLAGMNDHI AKPIEVGILY QTLLQYLCPE AKGLESADAD AAADQEVTSL
TSWPEHEDLD IDRGLQLVQN SERLYRRILE RFVTSQAQAG KKIRKALALG QQEDAVRLAH
TLKGVAGNLS ADTLVEEARQ LEAKLAQGEA CEAELEAVET RLVTIVAAIE RWMTEGVEEQ
GVESGEPLSA DALKEVLNTL VTQLEDADAD AVSTLESLSG QVVAGIWARL KPVSQMVAGY
QFDDGADLVR ELIQELETDG ESA
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