| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2928 |
|---|
| Symbol | |
|---|
| ID | 4605175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3482069 |
|---|
| End bp | 3482959 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639782339 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_928800 |
|---|
| Protein GI | 119776060 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0645759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.282889 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGATCTCA GGGCCATCAG ATACTTTATG GAAGTGGTGG ATGCCGGAGG CTTTGCCAAG
GCCTCCGAAA AGGTCCATCT CACCCAACCG GCGCTGTCAA AAGCAGTACG CCTGCTGGAA
GAAAGCCTGG AACTGCAGCT TATCGAGCGG GGCAAGCGCG GGGTGCATTT ACGCCTCACC
CCTGCCGGTG AAGTGGTCTA TCGCCACGGT TTGGCCCTGC TCGCGACCCG CGACGACATG
CTGGCCGAGC TGGAAGCCAT GCGAAGCCTC AGGGGCGGCC GACTCAAGTT TGGTTTGGCG
CCCCTGGGCA GCGCAGAACT GTTCGCCCCG GTCATCGCCC GCTTTCGCAG CCTCTATCCC
AAGATTGATA TGCAACTGCT GGTGCGCGGT GGCATTGAGC AAACCACGGC ACTGCGCAAA
GGCGAAATTG AACTGGCCAC CGGCATCACG GCGCTGGACA GCGAGTTTGA AGGGCTGCGC
ATTCGCAAGG ACCCCATGGT AGTGGTGTTG CCGCGGCAAC ACTTTCTGGC CCACAGACGC
GAGCTGGCGC TGCACGAACT GGCAGACACG GCTCATATCC TGTTTGAGCC CGAATATGCC
CTGCATCAGT TGGTGGTGGA TGCCTGTGAA CAGTCAGGCT TCTCCCCGAT TGACGTGACC
CGGGTAAGCC ACCCGGATTT TGGTATTGCG CTGGTGGCAG CAGGTACGGG GGCCATGATA
TTGCCAAGCT ATATCGCAGA GCGCCACATG GTGGCAGGGG TTGTGAGCGT GCCGCTGAAA
GAAACGGATC TGCACTGGGA ATTGTCGCTA TTTTGGCGCC GCGGCCAGCC CTTATCCTTT
GCCGCCGAAG CCATGATAGC CCTGGTGAAA GAGCGCCTTG GCGGCCTGTA A
|
|---|
| Protein sequence | MDLRAIRYFM EVVDAGGFAK ASEKVHLTQP ALSKAVRLLE ESLELQLIER GKRGVHLRLT
PAGEVVYRHG LALLATRDDM LAELEAMRSL RGGRLKFGLA PLGSAELFAP VIARFRSLYP
KIDMQLLVRG GIEQTTALRK GEIELATGIT ALDSEFEGLR IRKDPMVVVL PRQHFLAHRR
ELALHELADT AHILFEPEYA LHQLVVDACE QSGFSPIDVT RVSHPDFGIA LVAAGTGAMI
LPSYIAERHM VAGVVSVPLK ETDLHWELSL FWRRGQPLSF AAEAMIALVK ERLGGL
|
|---|
| |