| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2927 |
|---|
| Symbol | |
|---|
| ID | 4605174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3481534 |
|---|
| End bp | 3481965 |
|---|
| Gene Length | 432 bp |
|---|
| Protein Length | 143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639782338 |
|---|
| Product | holin-like protein |
|---|
| Protein accession | YP_928799 |
|---|
| Protein GI | 119776059 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1380] Putative effector of murein hydrolase LrgA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00321045 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.271061 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTCA GCGAAGGCAA AGTCAGACTC AAATCCGGTG CCAAAAGGGC CAGCCTGACC
CTGTTGCAGG CGGCGGCTAT CTGCCTGCTC GCCTGGCTGG CTCATGCTCT GGTGTTGTAT
TTTTCGCTGC CGGTGCCCGG CGGCGTGGTG GGCCTGGCGG TATTGTTGGC GCTGTTGTCG
CTTAAGTGGG TGCCCGAAAA GGCCTTGCAG GCCGGTGCGG CCTGGCTGCT GGGGGACTTG
CTGCTGTTTT TTATTCCGCC GGTGATATCT GTGATTCAGT ATGAGGCCAT GATTGAACAA
TATGGCGCCC GCATGCTGGG CTTTTTGGTG GCAGGCAGCG TAACCGTGCT CTTGGGTACC
GCCTGGGTAG TGGACAAAGC CTTTAAGTTT GAACGTGGCC TGCACCTGGC CCGTGCCGGA
GGGCGACTGT AA
|
|---|
| Protein sequence | MTLSEGKVRL KSGAKRASLT LLQAAAICLL AWLAHALVLY FSLPVPGGVV GLAVLLALLS
LKWVPEKALQ AGAAWLLGDL LLFFIPPVIS VIQYEAMIEQ YGARMLGFLV AGSVTVLLGT
AWVVDKAFKF ERGLHLARAG GRL
|
|---|
| |