| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2918 |
|---|
| Symbol | |
|---|
| ID | 4605165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3469134 |
|---|
| End bp | 3470507 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639782329 |
|---|
| Product | glycerophosphoryl diester phosphodiesterase |
|---|
| Protein accession | YP_928790 |
|---|
| Protein GI | 119776050 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0584] Glycerophosphoryl diester phosphodiesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.348995 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.261438 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTTG CGTGTCATGG TTCGTTAACG GGGCTGTCTT GGGCGTGTCA CAGAGCGAGG
TTAGGTTTAC TCCAATTTTT CTACTTTGGA ATCAACATGA TGCTCCGTAA AACCTGCCCC
TTGCTCTGCC TCCTGCCACT GCTGGCGTTA ACCGCCTGCA ATGATAACGA CAGTCCACAA
ACCGAAACTG AGGTCACGCC GCCAGCCGTC ACCAAGGTAC CTGCGCAGGT GGGCGTTCGC
CCGGCGTATC TCATTTCGCA AATGGCCGAA GGTGAGCTCA AATCGGCACT GGCCCAGTGC
AAAGACATGC CCTTTTACCG CAGCGACTTT TCCATCGGCC ACCGGGGCGC CGCCATGCAG
TTTCCTGAGC ACACCCGTGA GTCCTATCAG GCCGCCATCG ACTCGGGTGC AGGGGTAGTG
GAATGTGACG TGACCTTTAC CGCTGACAAG GCGCTGGTGT GCCGCCACTC CCAGTGCGAT
CTGCATACCA CCACCAATAT TCTCGCCATC CCTGAACTTG CCGCCAAATG CAGCGCCCCC
TTCAGCCCCT TCGATGCCGC CACCGGCACC CCCGCCTCGG CCAAATGCTG CACCAGCGAC
ATCAGCCTCG ATGAATTCAT GAGCCTGAAA GGCAAGATGG ACGGTGCCAA TCCCAGGGCC
ACCACAGTGG ATGAATACCT CGCAGGCACC CCGGGCTGGC GCACCGACCT TTATGCTGCC
ACCGGAACCC TGATGACCCA CGCTCAGTCG ATTGACATGT TCAAGGCCGC GGGCGTTAAA
ATGACCCCGG AGCTCAAGTC CCCCGCCGTC AGCATGCCCT TCGATGGCAT GACCCAACAG
GATTACGCCG ACAAACTGGT GGCCGAATAC CAAGCCGCCG GTGTGACGGC TGACCGTGTT
TACCCCCAGT CGTTTAATCT GGAGGATGTG AAGCACTGGA TTGCCACCGC ACCGGAATTT
GGTCAGCAGG CCGTGTATCT GGATGACAGG GATGAGACCC TGCCCGGTTT TGACCCCATG
AACCCTGACA CCTGGCAGCC AGATATGGCA AGCCTCAAGG CCGATGGTGT GGAGATAGTC
GCGCCGCCGC TGTGGATGCT GGTGACACTG GATAACGACG GCAAGATAGT GCCATCGGAA
TATGCCAAGG CCGCCAAGGC CGCCGGGCTT AAGATAATCA CCTGGACACT GGAGCGCTCG
GGTCATCTTA CCAACGGCGG CGGCTGGTAT TATCAAAGCA TTACCGATGC CACCACCAAT
GAAGGGGTCA CCTACGAGCT GTTGGACGTA CTTGCCAAAG ACGTGGGCGT AATAGGGGTA
TTCTCCGACT GGCCCGCCAC CGTCACCTAC TACGCCAACT GCAACGGACT GTAA
|
|---|
| Protein sequence | MPFACHGSLT GLSWACHRAR LGLLQFFYFG INMMLRKTCP LLCLLPLLAL TACNDNDSPQ
TETEVTPPAV TKVPAQVGVR PAYLISQMAE GELKSALAQC KDMPFYRSDF SIGHRGAAMQ
FPEHTRESYQ AAIDSGAGVV ECDVTFTADK ALVCRHSQCD LHTTTNILAI PELAAKCSAP
FSPFDAATGT PASAKCCTSD ISLDEFMSLK GKMDGANPRA TTVDEYLAGT PGWRTDLYAA
TGTLMTHAQS IDMFKAAGVK MTPELKSPAV SMPFDGMTQQ DYADKLVAEY QAAGVTADRV
YPQSFNLEDV KHWIATAPEF GQQAVYLDDR DETLPGFDPM NPDTWQPDMA SLKADGVEIV
APPLWMLVTL DNDGKIVPSE YAKAAKAAGL KIITWTLERS GHLTNGGGWY YQSITDATTN
EGVTYELLDV LAKDVGVIGV FSDWPATVTY YANCNGL
|
|---|
| |