| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2887 |
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| Symbol | |
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| ID | 4605134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3427315 |
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| End bp | 3428589 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 639782298 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_928759 |
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| Protein GI | 119776019 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAACT TAAATGGAGT GCTGAATATC AGCAATCTCT CTCGAGCTTT GTTAATTAGG
ATATTGTTTT TCAGCGGATT CTTTACTCTA CTGATTACGT CATTTCAGCT CTACTCTGAC
TATCAGCGTG GAGTATTAGA TATCCAGCGT GAGGCAGAAC TATCTATCAA ACAAACAGAG
GAGTCTCTGG CAGCTGCAGT TTTTGAGTTG TATGATGTTC GAGTTGAAAG CATATTGGAT
TCCATAAACA GCTTTAATGC TTTCGCTGAA GTAACGTTGA TAGTTGACAG CAAACTCCCC
GGCTACAATT CAATAAATTA TGTAGTTACA AAAAAATGGA GCGAAGATGC CATAAAAAAA
GAGTACAGCA AAGAATTAAC ATACAAAGCA CTAAATATTA AGATTGGGAA AATAAATTAC
AAGCTCAACT CATCTCCTTT GAAAGAAAAA ATATTTAGTC AAGCATGGAC AATTTTACTA
TCTCAGTTCA TTAAGACTAT TTTTGTTTCA GCATTCATCC TTCATATTTT TCAAAAGTTT
GTCATAAAAC ATCTCGCTGA GATTTCTACA TGGTTAAACA ATTTCAAACC TGACACCTCA
TATAACCCTA AAAATATCGA TTTAGAGTCA GATAGTAGCA ACGAGATGAC AAAACTCAAA
TCTGCTATTC TTGAAATGGG GCAACAAGTA TATAGACATA CCATCGAACT CGAAAGCATG
GTTGCATTGA GAACGGCCGA ACTGGAAAAA CTCGCATATA CTGATGGCCT GACAGGAATT
GCGAATAGGT CAGCATTTTT TAGCAGAGCC GAAGCAGAAT TACGCAAATC TCATCGATTA
TCCTACGATG TGGGAATATT GATGTTAGAT TTAGACCATT TTAAATCTAT TAATGATACC
TTCGGCCACG AAGCCGGAGA CAATGTATTA AAATTAGTTG CCGATACAAT CAGTACTTGT
CTACGTGAGA TAGACATGTT TGGAAGAGTT GGTGGTGAGG AGTTTGCGAT TTTAGTTCCT
GGTACAGATA AATTTGGCAT GCAAGCCTTA GCAGAACGCC TGAAAAGCGC AGTATCGAAT
ACCGATGTAT CCTTTTTAGA CGCCGAGAAA AAGATATCAG TAAGCATTGG CTACACCAAA
ATTTATCCTA ATGAATCATT AAAATCTGCA CTAAAGAGAG CTGACGAGAA TCTATATTCG
GCAAAAAGAA ATGGCAGAAA TTGCTATGTA ACAGAGATAG ATTTTTTACC CAAGGTAGTA
AACCAAACAG ATTGA
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| Protein sequence | MVNLNGVLNI SNLSRALLIR ILFFSGFFTL LITSFQLYSD YQRGVLDIQR EAELSIKQTE
ESLAAAVFEL YDVRVESILD SINSFNAFAE VTLIVDSKLP GYNSINYVVT KKWSEDAIKK
EYSKELTYKA LNIKIGKINY KLNSSPLKEK IFSQAWTILL SQFIKTIFVS AFILHIFQKF
VIKHLAEIST WLNNFKPDTS YNPKNIDLES DSSNEMTKLK SAILEMGQQV YRHTIELESM
VALRTAELEK LAYTDGLTGI ANRSAFFSRA EAELRKSHRL SYDVGILMLD LDHFKSINDT
FGHEAGDNVL KLVADTISTC LREIDMFGRV GGEEFAILVP GTDKFGMQAL AERLKSAVSN
TDVSFLDAEK KISVSIGYTK IYPNESLKSA LKRADENLYS AKRNGRNCYV TEIDFLPKVV
NQTD
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