| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2886 |
|---|
| Symbol | |
|---|
| ID | 4605133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3426623 |
|---|
| End bp | 3427300 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639782297 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_928758 |
|---|
| Protein GI | 119776018 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1794] Aspartate racemase |
|---|
| TIGRFAM ID | [TIGR00035] aspartate racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGGGCG GCATGAGCTG GGAATCCAGT CTCAACTACT ACAAAGCAAT CAACGAAGGT
GTTAAAGCCA GACTCGGTGG TCTGCACTCT GCAAAAATTT TGATGTATTC AGTTAACTTT
GCCGAGATAG AGCAACTCCA GCATCAAGGA GATTGGTCAA CATGTGCCAC GATTCTGACT
GACGCTGCCA AATCCATAGA GTCCGCAGGG GCAGACTTTC TGCTTATATG CACCAATACT
ATGCACAAGG TAGCACCAGA GATTGATGCC AATATAGGCA TTCCCATTCT GCATATTGCC
GATGCAACAG CGGAGCGGCT TAAATCGGAC GGAATTGACA GAGTCGGGTT ACTGGGCACC
CGCTTCACCA TGGAACAGGA CTTCTACAAA TCCCGGCTAA TCGAGCGCTA TGGCATCGAA
GTACTGGTGC CAAATGCGGC TGAGCGAGAA CTTGTGCACG ATGTGATTTA TAACGAACTC
TGTCTTGGCA AGATAAAACC AAAATCCCGC GAGGTGTATC TGGCCATCAT TGACTCGCTT
GCGAATGCTG GTGCCGAAGC CATCATCCTC GGCTGCACCG AAATCGCCCT TTTGGTAGAG
CAGAACCACA CTCACATCAA ACTATACGAC ACAACCCAAA TACATGCAGA GCAAGCAGTA
GCTAAGGCGC TTGAATAA
|
|---|
| Protein sequence | MLGGMSWESS LNYYKAINEG VKARLGGLHS AKILMYSVNF AEIEQLQHQG DWSTCATILT
DAAKSIESAG ADFLLICTNT MHKVAPEIDA NIGIPILHIA DATAERLKSD GIDRVGLLGT
RFTMEQDFYK SRLIERYGIE VLVPNAAERE LVHDVIYNEL CLGKIKPKSR EVYLAIIDSL
ANAGAEAIIL GCTEIALLVE QNHTHIKLYD TTQIHAEQAV AKALE
|
|---|
| |