| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2871 |
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| Symbol | |
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| ID | 4605118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3409113 |
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| End bp | 3410807 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639782282 |
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| Product | response regulator |
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| Protein accession | YP_928743 |
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| Protein GI | 119776003 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACGTC TCTTATTTAT TTGGCTGGCA TGCTTGCCAG TGTTCAGCGG CGCTCTGTAT
GCCGCGTCCT TACCGGTTGA ATCCAATGCC CCCAGCAAAT ACGCTCTCGC GGTTGCTGAA
GCGCGTACAG CACTATTGCC CCTAACCCCT TATCTAAGCC TGCTGGAAGA CTCCGGGGGG
CAGCTCAGCT TCGATGATGT CAGGCAACAG GCAGAGCAGA ACAAGTTCAT CCCCCTCAAA
GGTTCCGCTA ATTTCGGTTT CAGTCCGTCA ACATGGTGGG TCAGGGTGAG TGTGCATAAT
CCCGCTGACG AGGCGCGGCA GTTTTATCTG CGCCAGGATT ATCCATTGAT TGATTTTCTC
GACCTGTGGC AACCCTCTGC TGATGGATGG CTCCATACTG CCACGGGTGA CAGGCGAGCG
TTTCACAGTC GCTTACTGGA TTTGCGCACC TTTGTATTTC CGCTCACCCT GGCTCCCGGT
GAAACCCAAA CCCTGTATCT GCGTTTTGAA ACTCAGGGGT CGCTGAATAT TGGCCTTGCG
CTCTATGCGC CGAGCGAGCT TATCAGTCAG GTGACCTGGG AATATCTGTC CCTCGGCATT
TACTACGGCG GCTTTATCGT GCTGCTGGTA TATAACCTGA TTATCTTCCT CACTGTGCGT
GAGCGGGCAT TTATTTTTTA TGTGCTCTAT GTGCTCAGCT ATGGCCTCTA CATGTCGGTT
CACAATGGTC TGAGTTTTCA GTATCTGTGG CCTGAAAACA GTTGGATGGC CAACAAGAGT
CTGTTACTGC TGCTCGCCCT GTCGCTGTTT GGCGCACTGA GGTTTACCCG GGAAATCCTC
GGTTTGGCGC AGATCCTGCC GGGAGCCGAC AGGCTGGCGG CGCGGGTGGA GTGGGGCTGC
GTGCTCGGGC TCATACTGGC CCCGATACTG AGCTACCATC TCGTGGTGTT GCTGCTGTCG
GTACTGACCA CCTTTATCTG CATTCAACTG CTGGTGGTGG GTGTCATGGC GCTGATGAAA
GGGTCGCGTC CGGCGCGCTT TTACTTGGTT GCCTTCAGTG CGCTGCTGCT TGGCGCCTTT
GTGTATATGC TCAAGAGCTT TGGCGTATTG CCCCATAATG CCTTCACCCA AAATGCGTTC
CAGTTGGGCT CTCTCGTGGA GATGGTGCTC CTGAGTCTGG CACTTGGCAG CCGCATGCAG
GACATCAAGC GGCGGAATCA TATCGATGTA CTGACCGGCC TCTATAACAG GCGATTCTTT
GATGAACAGT TGCAGCAGGA GTATTTAAAG GCCTGTCGCC GTCATCAGCC ACTGTCGCTG
CTGGTGCTGG ATATTGATTA CTTCAAGCAA TTCAATGACA GTCGCGGCCA TGCCGAGGGT
GACAAGGCAT TGCAGTTGGT GGCAGATATA CTGGCTGGCA CAGTGCAAAA GCCCGGCATG
GCCTGCCGCT ACGGTGGTGA AGAGTTTGCC CTTATCCTGC CTGAAACGAG CGCCGGGGAG
GCCATGCAGT TGGCCGAGCG GATCCGTGAA AAGGTAGTCA GAGACACTAA AGAGCGGATT
GAACTTACCG TGAGTATCGG ATGCAGTGAG TTTGATGCAA AGCAGCATCT GAGTGGCTTT
GCCCTGTTTG AAGCGGCGGA CGAGGCCCTG TACCGCGCCA AAGCCGATGG ACGCAATTGC
GTAAGAGCTT GCTGA
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| Protein sequence | MIRLLFIWLA CLPVFSGALY AASLPVESNA PSKYALAVAE ARTALLPLTP YLSLLEDSGG
QLSFDDVRQQ AEQNKFIPLK GSANFGFSPS TWWVRVSVHN PADEARQFYL RQDYPLIDFL
DLWQPSADGW LHTATGDRRA FHSRLLDLRT FVFPLTLAPG ETQTLYLRFE TQGSLNIGLA
LYAPSELISQ VTWEYLSLGI YYGGFIVLLV YNLIIFLTVR ERAFIFYVLY VLSYGLYMSV
HNGLSFQYLW PENSWMANKS LLLLLALSLF GALRFTREIL GLAQILPGAD RLAARVEWGC
VLGLILAPIL SYHLVVLLLS VLTTFICIQL LVVGVMALMK GSRPARFYLV AFSALLLGAF
VYMLKSFGVL PHNAFTQNAF QLGSLVEMVL LSLALGSRMQ DIKRRNHIDV LTGLYNRRFF
DEQLQQEYLK ACRRHQPLSL LVLDIDYFKQ FNDSRGHAEG DKALQLVADI LAGTVQKPGM
ACRYGGEEFA LILPETSAGE AMQLAERIRE KVVRDTKERI ELTVSIGCSE FDAKQHLSGF
ALFEAADEAL YRAKADGRNC VRAC
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