| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2865 |
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| Symbol | |
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| ID | 4605112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3403659 |
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| End bp | 3404915 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639782276 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_928737 |
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| Protein GI | 119775997 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGGG ATACCAGCGG ACAGGACAGA ATTGTGGCCC CAAACAAGTA CCGTCGTATC
GGATGGATTG CAGGCGGGGT GGCGCTGTTT GCCATCGCGG CTGCTTGGGC CATGGGCAAC
AGCGGCATTT CTGCCGGACA CTCAGTTAAA CGCAGTGATA TGGTGACCGC GACCATCACC
CGCGGCACTT TGGTGCGCGA CATTGTCTCC AACGGTAAAA TCGTGGCCGC CAATGCGCCC
ATCATGTATG CCAGTGCCGA AGGCATGGTA ACCCTGTTGG CAAAACCCGG TGACACTGTG
TCCGTGGGCC AGGCACTGGC TACCATCGAC AGCCCCTTGC TCACCAACGC GCTGGCGCAG
GAACAGGCAC GTCTGGCCGG GCTGGAGGGG GAAGTTGAGC GCGCCACCTT AAGCGCCCGC
CGTGAGCAGC TCAGTGCCCG TCAGGTACTG GACACCGCCC GGGTTGAACT CGAAGCCGCC
GAGCGTGAAA GTCGCCGCGG CGATCTGCTT ATCGCCAAAG AACTCATCAG CCGTATCGAT
TTTGAAAAGG TAAAAGACGA CTACAAAAAA GCCCAGCTGC GCTTTGACCA CGCCGAACAG
GAAGTGGCGC TGATGGCCGA CACCCAGGCA TTCGAGCTTA AAAACAAGGC ATTGGAGCTC
AAACGGCAAC AGCTGGTGGT GGATGACCTG CGTCGTCAGG TGGCGGCTCT GGAGGTTACT
GCGCCGGTGG ATGGCATTAT CGGCAACTGG CTTACCGAAC AAAAAGCCCG CTTAAGCCGC
GGTCAGGCGA TCCTGACTGT GGTGGACCTG AGTGCCTTTG AAGCCGAGCT GGCCGTGTCT
GAATCCTATG CCGACGAGCT GGGGCTCGGC ATGGCGGTGG AGTTGGACTT GGGCGGGGTG
AAAACCACAG GAACCCTGGC TTCCATCTCA CCCGAGGTGA GCCGAGGCGA AGTACTCACA
CGGGTACGTT TTGATAACGT TGATGGGCTA AAACTCAGAC AAAACCAGCG GCTCAGCGCC
CGTATCCTTC TGGAAAATTT AGAAAATGTA CTGATGGTGC GCCGTGGCAG TTTCGTCAGT
GACGGCGGTA ACCATGTCTA TTGTATCAAA GGCGATATCG CCAGCCGCAC CCCCATCAAG
CTTGGCGCCC GCAGCGTCAG CCACGTGCAG GTGCTTGAAG GTGGAGAGGC CGGTGATGAG
TGGATTATCT CCGGCAGTGA CAAGATGAAG CAGGCCGAAC ATGTCAGCCT CTATTGA
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| Protein sequence | MIRDTSGQDR IVAPNKYRRI GWIAGGVALF AIAAAWAMGN SGISAGHSVK RSDMVTATIT
RGTLVRDIVS NGKIVAANAP IMYASAEGMV TLLAKPGDTV SVGQALATID SPLLTNALAQ
EQARLAGLEG EVERATLSAR REQLSARQVL DTARVELEAA ERESRRGDLL IAKELISRID
FEKVKDDYKK AQLRFDHAEQ EVALMADTQA FELKNKALEL KRQQLVVDDL RRQVAALEVT
APVDGIIGNW LTEQKARLSR GQAILTVVDL SAFEAELAVS ESYADELGLG MAVELDLGGV
KTTGTLASIS PEVSRGEVLT RVRFDNVDGL KLRQNQRLSA RILLENLENV LMVRRGSFVS
DGGNHVYCIK GDIASRTPIK LGARSVSHVQ VLEGGEAGDE WIISGSDKMK QAEHVSLY
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