| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2834 |
|---|
| Symbol | |
|---|
| ID | 4605081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3370684 |
|---|
| End bp | 3372108 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639782245 |
|---|
| Product | sigma-54 dependent transcriptional regulator/sensory box protein |
|---|
| Protein accession | YP_928706 |
|---|
| Protein GI | 119775966 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.653087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.743395 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACAC AGGAAAGCTT TTTACCGGAA AACCGCCTGC TGCTGGATGC CGTCAGCGAA
GGTATCTATG GTTTTGATTT GGATGGCCAT GCGGTTTTTA TCAATCCAGC GGCCGAGCGT
ATGACCGGCT GGCAGGCAGA TGAACTGCTC GGCAAAACCA TCCATAACTT CCACCACCAC
AGCCATGCCG ATGGCAGCCA CTATCCCCAC GAAGACTGCC CGATCTATCA AACACTTAAG
GATGGCAAGG CACGGGAGAT CAGCGACGAA GTATTCTGGC GCAAGGATGG CAGCAGCTTC
CCGGTACATT ACAGCTCAAC TCCGGTATGG CAGGACGGCA AGCTCAAAGG CGTGGTCGCG
ATATTTCGCG ACATCAGTTT ACAAAAGCAA ACCGAGCAGT CGCTGCGCCA GGCGCTGGAG
CAGGTGCAGG CGCTGTCGGA GCAGTTGGCG TCTGAAAACT CACTGCTGCA GGCCGAACTT
GAGGATAAGC GCGGCCCCTC GCAGATAACC GGCAGCAGCG ACTGTATTCA AAATCTGCAG
AAGCAAATCC GCCTGGTGGC CAACACCGAC AGCACAGTTT TGATACAGGG CGAAAACGGC
ACCGGCAAGG AGCTGGTCGC CCGCGAGCTT CATCAACTCA GCAGTCGCCG TGATAAGCCG
ATGATCTCGG TTAACTGCGC CGCCTTCTCG GCATCTCTGT TGGAAAGTGA ACTTTTTGGT
CATGAAAAGG GCGCTTTCAC CGGCGCCAGC AATCGCCGCA AGGGCCGCTT TGAACTGGCC
CACAAGGGTA CCCTGTTTCT GGATGAAGTG GCCGAGCTCA GCCTTGAGGC GCAGTCCAAG
CTGCTTAGGG TTATTCAGGA GCAGGAGTTT GAACGTGTGG GCGGCAGCGA GCGCATCAAG
GTGGATATCC GCCTGATAGC CGCCACCCAT CACGACTTGC AAAAAAGAGT CGAACAGGGA
CTGTTCAGGA TGGATCTCTT CTACCGCCTG AACGTGTTTC CACTTAAGGT ACCGCCGCTT
CGTCAGCGCG CCGGAGATAT TCCCGAACTG GTGCAGCAAC TGCTCAGGAG CCTGTCACAA
AAGCTCGGCA AGCCGCTGGC AGGGGTCGAT GCCGTCAGCC TCAAACGCTT GCAGCAATAC
AGTTGGCCGG GCAATGTGCG CGAACTGCAA AACCTGCTGG AGCGGGAAGC GATTCTCACC
CATCAGCCGG TTCTCAAAAT GAGCTCAATC CCCGGCAGCC AAATGCCGCC TGTTACAGGA
CAAACCCTGG CCGAGGTAGA GGCAAGTCAT ATTCTCTTAA CCCTGGAAAA TTGCGACTGG
CGCATCTCGG GCCCCGGCGG TGTGGCGGCG GTATTGGGGC TACCACCCAG CACCCTGAGA
TCCAGGATGC AAAAACTCGG CATTCGCCGA TCTGCCAGGC AGTAA
|
|---|
| Protein sequence | MPTQESFLPE NRLLLDAVSE GIYGFDLDGH AVFINPAAER MTGWQADELL GKTIHNFHHH
SHADGSHYPH EDCPIYQTLK DGKAREISDE VFWRKDGSSF PVHYSSTPVW QDGKLKGVVA
IFRDISLQKQ TEQSLRQALE QVQALSEQLA SENSLLQAEL EDKRGPSQIT GSSDCIQNLQ
KQIRLVANTD STVLIQGENG TGKELVAREL HQLSSRRDKP MISVNCAAFS ASLLESELFG
HEKGAFTGAS NRRKGRFELA HKGTLFLDEV AELSLEAQSK LLRVIQEQEF ERVGGSERIK
VDIRLIAATH HDLQKRVEQG LFRMDLFYRL NVFPLKVPPL RQRAGDIPEL VQQLLRSLSQ
KLGKPLAGVD AVSLKRLQQY SWPGNVRELQ NLLEREAILT HQPVLKMSSI PGSQMPPVTG
QTLAEVEASH ILLTLENCDW RISGPGGVAA VLGLPPSTLR SRMQKLGIRR SARQ
|
|---|
| |