| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2818 |
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| Symbol | pdxA |
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| ID | 4605065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3357585 |
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| End bp | 3358574 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782229 |
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| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
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| Protein accession | YP_928690 |
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| Protein GI | 119775950 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
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| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.62928 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACAGTGA AACGCATAGC CATCACCCCC GGAGAGCCTG CCGGTATAGG CCCAGATCTG
GTTATTCAGC TTGCCCAGCA AGCCTGGCCG GTACAGTTGG TGGTATGCGC CGATCCTGAG
CTGCTGCACA GCCGGGCCCG TAAGTTGGGC CTGCCACTGA CTCTGGAGCC CTATGACGCC
AGCCAGCCCG CCAAACCTCA GGCGGCGGGT ACCCTCACCC TGGTGCCTTT CAAGCTGAAT
GCACCGGCCG AGTGTGGCAA GCTCAATGAG CAAAACGGGC GCTATGTGGT AGATACCCTG
AGCTACGCCG GCGAGAAAAA CATGACCGGC GAGTTTGATG CCGTAGTTAC GGGCCCCGTG
CACAAGGGCA TCATCAACCA GGCGGGCATC TCGTTCAGTG GTCATACTGA GTTTTTTGCC
AATCAGGCGG GTTGCCAGGA TGTGGTGATG CTGCTGGCCT GCCCCGGTTT GCAGGTCGCG
CTGGTGACTA CCCATATCCC ACTGGCGTAT GTGGCCAAAG CCATTACGCG AGAAAGATTA
CATAAAATTA TCAAGATCCT GCATCAGGAT CTGGTCAGCA AGTTTGGCAT TGCCTCACCC
AAAATTTATG TCTGCGGCCT TAACCCCCAT GCCGGGGAAG ATGGACACCT GGGCCGCGAG
GAACTGGATG TAATCATCCC AGCCCTCAAT GAACTCAGGG AAGAGCTGAA CTTTAATATC
GTCGGCCCGT TGCCTGCAGA TACCCTGTTC CAGCCTAAAT ATCTGGACGA TGCCGATGTG
GTACTTGCCA TGTACCACGA TCAGGGATTG CCGGTACTGA AGGCACAGGG CTTTGGCAAA
TCCGTCAACA TTACCCTTGG CCTGCCTTAC ATTCGCACCT CGGTGGACCA TGGTACCGCC
CTGGAGCTGG CAGGTACGGG TCGCGCCGAC ATCGGCAGTT TTGTTTGTGC CCTCAACAAG
GCCATCGAGC TGGCTGCCAA GACCAACTGA
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| Protein sequence | MTVKRIAITP GEPAGIGPDL VIQLAQQAWP VQLVVCADPE LLHSRARKLG LPLTLEPYDA
SQPAKPQAAG TLTLVPFKLN APAECGKLNE QNGRYVVDTL SYAGEKNMTG EFDAVVTGPV
HKGIINQAGI SFSGHTEFFA NQAGCQDVVM LLACPGLQVA LVTTHIPLAY VAKAITRERL
HKIIKILHQD LVSKFGIASP KIYVCGLNPH AGEDGHLGRE ELDVIIPALN ELREELNFNI
VGPLPADTLF QPKYLDDADV VLAMYHDQGL PVLKAQGFGK SVNITLGLPY IRTSVDHGTA
LELAGTGRAD IGSFVCALNK AIELAAKTN
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