| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2811 |
|---|
| Symbol | |
|---|
| ID | 4605058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3349618 |
|---|
| End bp | 3350571 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639782222 |
|---|
| Product | glycerate dehydrogenase |
|---|
| Protein accession | YP_928683 |
|---|
| Protein GI | 119775943 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.119851 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.62617 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAA TTTGTGTATT GGATGGCTTC ACCCTTAACC CCGGCGATCT GGATTGGTCG
CCCCTGGCTG ATATTGGCCC CTTCGACGTC CATGACAGGA CACCGAAAGA GCTTATCCTG
AGCAGGGCCG CCGGCGCCCG GTTTTTACTG ACCAATAAAA CCGTGCTCGA TGCCGCCACC
CTCGAGGCTA TGCCTTCGCT GGAATACATA GGGGTGCTGG CAACGGGGAC CAATGTGGTG
GATGTGGCGG CCGCAAAACG TCTGGGGATA GCCGTGACCA ATGTGCCCGG TTATGGCCCG
GATGCGGTGG CGCAAATGGG CTTTGCCCAT GTGCTGCATC ATATGTCCCG GGTCAGCGCC
CATCATGATG CGGTGACCCA GGGGCAATGG AGCGGGCAGG CCGACTTTTG CTTTACCCTT
GGGCAGTTGG AGTCATTGTC AGGCAAGACC TTGGGCCTGG TGGGCTTTGG CGACATTGCG
CGGCAAATGG CGCGTATCGG TATGGCCTTT GGTATGAAGT TGCTGGTACA CAGCCGCAGT
AAACCCACGG ATTTACCGGA GGGAGCCAAG TTTGTTGCGC TGGACACCCT GTTTGCCGAA
TCCGATGTGT TATCGCTCCA TTGCCCGCTG ACCGACGATA CCCGGGACAT GGTCAATCGC
GAAAGCCTGG CGCTCATGAA ACAGGGGGCC TTACTTATCA ATACCGCCCG TGGCGGTCTG
GTGGATGAAG TGGCTCTGGC GGATGCGCTC AATGCCGGAC GCGTCAGGGC TGGAGTCGAT
GTGCTCTCAA CCGAGCCGCC GGCTCCAAAT AACCCGCTGC TCCATGCCGC CAATATCAGC
ATCACTCCCC ATAATGCCTG GGCTACCGTG AAGGCGAGGC AGAAGCTGCT GGATATTGCG
GTTGAAAACC TCAGGGCATT CAGCCGTGGT GAAAGCGTAA ACCGGGTCGA TTGA
|
|---|
| Protein sequence | MTAICVLDGF TLNPGDLDWS PLADIGPFDV HDRTPKELIL SRAAGARFLL TNKTVLDAAT
LEAMPSLEYI GVLATGTNVV DVAAAKRLGI AVTNVPGYGP DAVAQMGFAH VLHHMSRVSA
HHDAVTQGQW SGQADFCFTL GQLESLSGKT LGLVGFGDIA RQMARIGMAF GMKLLVHSRS
KPTDLPEGAK FVALDTLFAE SDVLSLHCPL TDDTRDMVNR ESLALMKQGA LLINTARGGL
VDEVALADAL NAGRVRAGVD VLSTEPPAPN NPLLHAANIS ITPHNAWATV KARQKLLDIA
VENLRAFSRG ESVNRVD
|
|---|
| |