| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2762 |
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| Symbol | |
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| ID | 4605009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3302819 |
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| End bp | 3304855 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639782173 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_928634 |
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| Protein GI | 119775894 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.317441 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGTAA ATTTTCAGTT GTTTGATCGC AGCTTTCTGT TGGCTGTGCG CGAGTCTTTT
ATCGCGCTGT TACCTTTTCT GCTTATCAAT GCGCTGCTGG CGCTTTTTCC GGTACTTGCC
ACTGTGCTGG CACCTGAACT GTCGGTGTAT GATGCTTTTC ATTGGTTTGA AGGCATAAGT
GATACGCTCG GGCGGCTTTT CCCTTTACTG GCGATGTTGT CGCTGTCGTA CCACTTTGCC
AAATATCTGG ATATTTCAGC GGTGGCCTCG GCCACCCTGT CCCTTTGCAT CATCTTTTCG
CTGCATGTGC ACACCAGCGG TGGGTTGGTG TTCAGCGATT ATCTGCTTGA GGTGCTCGGC
GACCCGCGCA TGGTGATAAC TCCCATACTG GCCGCCTACA TCATGCGCCA CTTTTTAAAA
TTCCCCCAGT TGCATATGGT GAGAAGTGCC GAAATCAGCG CCTATTTGAG TCAGCACCTG
AACCTGATTA TTCCCATGGT GCTGACTTAT ACGTTGGTGG TTCTAATCCT CAAGGCCATG
AGTCTGCTGT TGGTGCTGGG GATTTCTCCC ATGGTGGATG CGGTGGGCGA ATTCGGCCCG
ATGGGACAGT TAGTTTTCCG GGTGCTGTTG ACACACATGC TCTGGTGTTT TGGGGTACAT
GGCGATAATG CCTTTTTGCT GCTGATTGGC GATGACAATG GTCTGCGATA TCTGGCACCC
AACCTGACCT TCAGCGAGTT TATGGATCTC TTTGTGCTGC TGGGTGGCAG TGGGGCCACC
ATCCCGCTGC TGATTGCCAT TTTTTTGGAA AGCCGCGACG AGCAGAGCCG GCATCTGGCC
AAAATTGCGG TGCCTTTCTC TGTTGTGAAT ATCAATGAAA TCCTGATTTA CGGCTTGCCC
ATAGTCTTTA ACCTGCGCCT CGCTATCCCC TTTGTGTTGC TGCCCTGCCT GAATGTGCTT
ATTGCCTGGA TGGCGATTTC AGCCGGTTTT TTGAGTTTTG ATGGCAAACC CTTCCCCTGG
GTGACGCCAC TGTTTTTGAA TGGCTGGATT GCATCGGGTG GTTTTACCGT GGTGGCGCTG
CAGCTGTTTT TGGTAACGGT TGGCGTATTT ATTTATCGGC CGTTTATTCG TAAGTACAGT
GCCCTTGCCG ATACCAATCA ATATGATCGT GAGCTTATCA AACGCACTGA ATTACAAACA
GATATTGAAC GTATGGCCGA GCGGCAGTAT AGCCGCAATC AGTCTGAAAC CCTCGCTGCC
AGTCGCAATC TGGAGCGTAC GGTTCGCGAA GTATTGAGTG GTGAGCTCCT GGTGCACTAT
CAGCCAAAGC TCAAGTTGCC GGGGCAGGAG GTGGTCGGTT TCGAGGCGCT TTTGAGGCTG
AAGGATGCAG ACGGCAATAT AAAAGGGCCT TGGTTTATTG ATAATTTTCA GCGGGCCGGT
TACTCCCACG TGATAGACCG CTTTGTGATT AATACAGTGG CAGAGGATTT GAGGCGCTGG
CAGGCAGCGG GCTTTTCGCC CAAGGTCAGT ATTAACCTCG ATCCGAACAA CTTAAACGAT
GTGCTTATGC TCGACAGGCT GCGCACCACC CTGGGGGAAT TTGCCCATCA GGTTGAAGTG
GAAATCCTCG AGCGGGCATT TATGAGGGAT CTGCAAGGCA TTAACCGCGC CATCGCTCAA
CTTCAGGCAT TGGGGTTCCG ATTCTTGCTG GATGACTTCG GTACGGGATT TTCCAGTCTC
AGTCTGCTGA CCCAGATTAC AGTGGATGGC ATCAAGCTTG ACCGGAGTAT CCTCGGCAAA
ACCGATACTG ATCAGGGCCG GGTGCTTTAC CGGCAAATTT GCCAGCTGTG TAAATCGCTC
GGGTTTCAGT TGGTTGCCGA GGGCGTTGAA ACCCCATCGG AGGCGAGCTT TGTCGCTGAT
GCCGGTGTGG ATTATGTTCA GGGCTGGTTG TATGCCAAGG CATTGCCTCA AGCCCGGGCA
ATGGAATATG CGCTTAATCA TGGCAAAATA ACCCCTAACG ATTTGGACAC CATCTGA
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| Protein sequence | MQVNFQLFDR SFLLAVRESF IALLPFLLIN ALLALFPVLA TVLAPELSVY DAFHWFEGIS
DTLGRLFPLL AMLSLSYHFA KYLDISAVAS ATLSLCIIFS LHVHTSGGLV FSDYLLEVLG
DPRMVITPIL AAYIMRHFLK FPQLHMVRSA EISAYLSQHL NLIIPMVLTY TLVVLILKAM
SLLLVLGISP MVDAVGEFGP MGQLVFRVLL THMLWCFGVH GDNAFLLLIG DDNGLRYLAP
NLTFSEFMDL FVLLGGSGAT IPLLIAIFLE SRDEQSRHLA KIAVPFSVVN INEILIYGLP
IVFNLRLAIP FVLLPCLNVL IAWMAISAGF LSFDGKPFPW VTPLFLNGWI ASGGFTVVAL
QLFLVTVGVF IYRPFIRKYS ALADTNQYDR ELIKRTELQT DIERMAERQY SRNQSETLAA
SRNLERTVRE VLSGELLVHY QPKLKLPGQE VVGFEALLRL KDADGNIKGP WFIDNFQRAG
YSHVIDRFVI NTVAEDLRRW QAAGFSPKVS INLDPNNLND VLMLDRLRTT LGEFAHQVEV
EILERAFMRD LQGINRAIAQ LQALGFRFLL DDFGTGFSSL SLLTQITVDG IKLDRSILGK
TDTDQGRVLY RQICQLCKSL GFQLVAEGVE TPSEASFVAD AGVDYVQGWL YAKALPQARA
MEYALNHGKI TPNDLDTI
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