| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2742 |
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| Symbol | |
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| ID | 4604989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3276377 |
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| End bp | 3278218 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639782153 |
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| Product | ATP-dependent RNA helicase SrmB |
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| Protein accession | YP_928614 |
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| Protein GI | 119775874 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTATTTG AAGATTTCCA ATTGGACCCC GAGCTGCTGG AGTCCCTGAA AGCCATGGGG
CACAACACCC CCACCACCAT TCAGCGTATG ACCATCCCCC TTGCCATGGA GCAAAGGGAT
ATTCTGGCGC GCGCTCCAAC AGGGACTGGC AAGACTGCCA GCTTTTTGCT GCCTGCGTTG
CAGCATCTGA TAGATTTCCC CCGCCGTCGT CCGGGTCAAC CCCGGGTGCT GGTATTAACC
CCAACCCGTG AGCTGGCAAG CCAAATCCAT CGCTACGCCA GCCATTTGGC CACCAATCTG
GAATTGGACA TCAAGCTGAT CACCGGTGGT GTGCCCTATG GCCCACAGGA AGAGATGCTC
AAGAGTAACG TCGATATCCT GGTGGCAACC CCGGGTCGCC TGTTGGAGTA CCTGGACAAG
GGCCATTTCA GCGCCGAACT GGTGGAAGTA CTGGTTATCG ATGAAGCCGA CCGCATGTTG
GATATGGGCT TTGGCGAAGT GGTGAAAACC ATCGCCGTGG AAGCCAGTGG CCGTAAGCAG
GCCATGCTGT TTTCCGCCAC TCTGGAAGGT GGCGGCGTGG GCAGCTTTGC CCGCGAGCTC
CTGAACGAAC CCATGTTTGT TGAGTCTGAG CCGCCCCGCA GTGAAAAAGC CAAAATCCAT
CAGTGGATAC ATCTGGCCGA CGACAAAGAC CACAAGTTTG CCCTGCTGAC CCATCTGCTC
AAGCAGGAAG AAGTCAAGCG GGCCATTGTT TTCTGTAAAA CCCGTGACGT TGTGGCGTCG
CTGGAAGGCC AGCTGCAACA GGCAGGTATT GCCTGCGCCT TTATGCGCGG CGACATGGAT
CAGAAAAAAC GTTTCCAGGC ACTGGGTCGC TTTACCAAGG GTGAAGTGAA CGTGCTGCTG
GCCACCGACG TGGCTGCACG GGGTATCGAC ATTGAAGACA TCACCCATGT CATCAACTTC
GATATGCCAC GCTCCGCCGA TACCTATGTG CACCGCATTG GCCGTACCGG CCGTGCAGGT
GCCAAGGGCA CCGCCATTTC TTTGGTGGAA GCCCACGACA TGCGCATTCT GGGCAAGGTC
GAGCGTTATA TTGAGCAGCC GCTCAAGCGC AGGGTGATTG AAGAGCTGCG CCCCAAGCAC
AAGGAAGCCA AGGTGCCCAC CAAGAAAAAG GTCAAGGCCA AGGATGCCAA AGCCAAGGCC
AAAAATGCCA AGCCCAAGGC AGCCCCCGGC CGTGGTCCGG CTACACCCAA CGCCAAGACC
GCAGACAGCA GGGGCGGCGA CAACGTCCGT TCTGGCGGCA GAGCGTCGAC GCGCCGCACT
GGCACTGATG AGAAGGGCGA CGGTCTGGAC AAACACGAGC GCCGAGGCCA TGACAAGCAG
GAACGCAGAA GTCACGATAA GGGCGATACG GGCCGCAGCC AACATGGCGC ACGTGAGCGT
ACTGAAGGCC AGAGTTATGC CTCCAGAGAC GGCAATCCCC GTGGCGCCAA GCGCGAAGTC
GGTGAAAAAA CGCCCCATAG CCGTAGCGAC AAGCGTCACC AGGATACTGA CCGTCAAAGC
GCCAGAGGTT ATCAATCGAC CGAGCGCAGC CCAGCCCAGG GCAAAGCGCG CAGTGGCTCG
CAGAGCAGCG ATCGCGCCAA TGCTGAAGGA AAACCACGTT ATAACGCCCA GGGCAGTGAG
CGTAACGGCT CCAAGAGCAG CGATCGCGCC AATGCTGAAG GAAAACAGCG TTATAACGCC
CAGGGCAAGG ACGGTAAACG CAGTGAGAAA AGCGGCGACT ACCGCTCGTC TGCTCCCAAA
GGTAGCGGCG GCAAAAGCCG CAAACCCTCA AAAGCGGATT AA
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| Protein sequence | MLFEDFQLDP ELLESLKAMG HNTPTTIQRM TIPLAMEQRD ILARAPTGTG KTASFLLPAL
QHLIDFPRRR PGQPRVLVLT PTRELASQIH RYASHLATNL ELDIKLITGG VPYGPQEEML
KSNVDILVAT PGRLLEYLDK GHFSAELVEV LVIDEADRML DMGFGEVVKT IAVEASGRKQ
AMLFSATLEG GGVGSFAREL LNEPMFVESE PPRSEKAKIH QWIHLADDKD HKFALLTHLL
KQEEVKRAIV FCKTRDVVAS LEGQLQQAGI ACAFMRGDMD QKKRFQALGR FTKGEVNVLL
ATDVAARGID IEDITHVINF DMPRSADTYV HRIGRTGRAG AKGTAISLVE AHDMRILGKV
ERYIEQPLKR RVIEELRPKH KEAKVPTKKK VKAKDAKAKA KNAKPKAAPG RGPATPNAKT
ADSRGGDNVR SGGRASTRRT GTDEKGDGLD KHERRGHDKQ ERRSHDKGDT GRSQHGARER
TEGQSYASRD GNPRGAKREV GEKTPHSRSD KRHQDTDRQS ARGYQSTERS PAQGKARSGS
QSSDRANAEG KPRYNAQGSE RNGSKSSDRA NAEGKQRYNA QGKDGKRSEK SGDYRSSAPK
GSGGKSRKPS KAD
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