| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2739 |
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| Symbol | |
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| ID | 4604986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3272740 |
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| End bp | 3273705 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639782150 |
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| Product | integrase/recombinase XerD |
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| Protein accession | YP_928611 |
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| Protein GI | 119775871 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCGCCA AAGCCAATAC CTCCCGTAAG GGTGGCAAGC GCCCTGAAAA ATCCGGCGCC
CCATTGAAAC CCAGTGCTGC CGGTATGGCG TTGATAGATG CATTTTTGGA TGAGCTTTGG
TCGCTTCAGG GATTGTCTGA TAACACCTTA AGTGCCTATC GTACCGATTT GTGTCAGTTT
GATGCCTTTC TCACGGCAAA AGGTATAGGG TTGCTGGCCC TCGATAGTCT CACGCTAAGG
GACTATCTGG CGTACCGTTT TGAACAGGGC ATGGCCAAAA CCTCGACGGC ACGTATGCTC
TCAAGCCTGC GCCGCTTCTA TCGTCATCAA CTGGTTTCCG GCACCTTGAG TGAAGACCCA
ACCGCCCTGA TTGAATCGCC CAAACTCCCC AAATCTTTGC CTGGGAGTCT GTCGGAGGCA
CAGGTGGAGC AGCTGCTGGC GGAGCCAAGC AGTGACGACC CTGTAGAATG CCGCGATAAA
GCCATGCTCG AGCTCCTGTA TGCCACCGGG CTCAGGGTCA GCGAGTTGGT GGGCCTTGGC
ATGTCGGAGC TGGGGCTGCG TCAGGGGCTG GTGCGTATTA TCGGTAAGGG GGGGAAAGAA
CGATTGGTGC CCATGGGGGA AGTGGCCCAG GACGCGCTGG AACAGTTTCT CGCAGGCCCA
AGGCAGATGT TGCTTAAGCA GGGCGCCACC GAGGTGGTGT TTCCATCCAA TCGTGGCCAG
CAAATGACGC GGCAAACCTT TTGGCACCGC ATTAAGCTGT ATGCGCTCAG AGCTGGCATT
TCCACTGAGC TGTCGCCCCA CACGTTAAGG CACGCCTTTG CTACTCATTT GTTGAACCAC
GGCGCCGATC TCAGGGTAGT GCAGCTGCTG CTGGGGCACA GTTCATTATC GACAACCCAA
ATCTATACCC ATGTGGCCAG AACCCGCCTT GCGGATCTCC ATGAAAAACA TCACCCCAGG
GGCTGA
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| Protein sequence | MSAKANTSRK GGKRPEKSGA PLKPSAAGMA LIDAFLDELW SLQGLSDNTL SAYRTDLCQF
DAFLTAKGIG LLALDSLTLR DYLAYRFEQG MAKTSTARML SSLRRFYRHQ LVSGTLSEDP
TALIESPKLP KSLPGSLSEA QVEQLLAEPS SDDPVECRDK AMLELLYATG LRVSELVGLG
MSELGLRQGL VRIIGKGGKE RLVPMGEVAQ DALEQFLAGP RQMLLKQGAT EVVFPSNRGQ
QMTRQTFWHR IKLYALRAGI STELSPHTLR HAFATHLLNH GADLRVVQLL LGHSSLSTTQ
IYTHVARTRL ADLHEKHHPR G
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