Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2737 |
Symbol | |
ID | 4604984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3270060 |
End bp | 3271784 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639782148 |
Product | single-stranded-DNA-specific exonuclease RecJ |
Protein accession | YP_928609 |
Protein GI | 119775869 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAAGTACA AGCTCACCAG GCGCGAAACG GTGGATGACT CCCACCTGCC AAATCACCTG CATCCTTTGA TAAAGCAGCT GCTTGCCCGC CGTGGGGTAG CTGGCGATGA CTGCGAGCAG GAGCTGTCGC GCCTGCTGCG ACCCGAGACT ATGCTGGGTC TCGATAGGGC CGCGTGCCTG TTGGCCGACG CTGCGATGGC CTCAAAGCGT ATGCTGATTG TCGGTGACTT TGATGCCGAC GGTGCCACTT CCACCAGTGT GTGTTTGCTG GCACTCAAGA TGCTCGGTAT TCACGGCGCT GATTTTCTTA TTCCCAACCG CTTCGATTAT GGTTATGGCC TCAGTGTGCC CCTGGTGGCC CTCGCGGTGG AAAAGGGCGC CGAGGTGCTT ATCACGGTCG ACAATGGTAT CAGCAGCATC GAAGGTGTTG CGGCGGCCAA AGCCGCCGGG ATGCAGGTGG TGATCACCGA CCACCATCTG CCCGGGCAGG TATTGCCGGA CGCCGACGCC ATAGTTAACC CCAATCAACA GGGGTGCACC TTTGCCAGCA AATCCATTGC CGGTGTGGGT GTGGCCTTTT ATCTGATGCT GGCCCTTCGC GCCGAACTCA GACGCCGTGG CTGGTTTGAA AAGCTTGGTA TAAAGGAGCC CAATCTGGCG GTACTGGTGG ACATAGTAGC GCTGGGGACT GTGGCCGACG TGGTCAGTTT GGATGCCAAT AACCGGATTC TGGTGGATGC CGGGCTTAAA CGTGTCAGAG CTGGCCGTTG CAGACCCGGG ATCACTGCGC TTTTGGAAGT CGCGAAGCGT AATCCCGCCC GCGCAGTGGC TGCTGACTTT GGCTTTGCCG TTGGGCCCAG ACTCAATGCT GCCGGGCGCC TCGATGAAAT GTCTCTGGGC GTCGAAACCC TTTTGTGCGA CGACATCATG TATGCCCGCA GAATGGCGGC CGAGCTGGAT GGGCTTAATC AGGAGCGCCG CGAGCTGGAA ACCGGTATGC AGGCCGAGGC ATTAAAGAGC CTCGAGCGCT TGCAACTGGA AGAATCGCAA CTGCCCTGGG GCATAGCCCT GTATCAGGAT GACTGGCATC AGGGGGTGAT AGGCATTCTG GCGTCCCGTA TCAAAGACAA ATACCACAGA CCCGTTATTG CCTTTGCTGA AGCGTCGGAT AACGAGGTAA AGGGCTCGGC CCGCTCCATC AAGGGTCTGC ATATGCGAGA CTTGCTGGAG TTGATTTCCA GCCGTCATCC CGGGCTTATT CCCAAGTTTG GCGGCCATGC CATGGCAGCA GGTTTGAGTC TCGCCAAAGC GGATGTCAGC AAGTTTCAGA CAGTGTTTGA TGACACTGTT CGGGAGCTTC TTTCCCCTGA ACTGCTGACA GGTGAAATCC TCTCCGATGG CGAGTTGCCC ATCGAATACC TGACGCTGGA AACCGCGAAC CTTATCCGTG CCAGCGGGCC CTGGGGACAG GGCTTTGAAG AGCCATTGTT TGATGGCCAT TTCAGGTTGT TACAGCAGCG TCTTGTGGGT GAGAAGCACT TAAAAATGAT GGTGGAAACA GAGTGTGGCC GGCTGATGCT GGATGCCATT GCCTTCAACG TGGACCTTAA ACTCTGGCCC GATGCCACGG TGCGCCATGT GCACCTTGCT TATCGCCTTG ATGTGAACGA GTTTCGTGGC AACCAAAGCC TGCAGCTCTT GGTCGAGCAA ATCGACGCCA AATGA
|
Protein sequence | MKYKLTRRET VDDSHLPNHL HPLIKQLLAR RGVAGDDCEQ ELSRLLRPET MLGLDRAACL LADAAMASKR MLIVGDFDAD GATSTSVCLL ALKMLGIHGA DFLIPNRFDY GYGLSVPLVA LAVEKGAEVL ITVDNGISSI EGVAAAKAAG MQVVITDHHL PGQVLPDADA IVNPNQQGCT FASKSIAGVG VAFYLMLALR AELRRRGWFE KLGIKEPNLA VLVDIVALGT VADVVSLDAN NRILVDAGLK RVRAGRCRPG ITALLEVAKR NPARAVAADF GFAVGPRLNA AGRLDEMSLG VETLLCDDIM YARRMAAELD GLNQERRELE TGMQAEALKS LERLQLEESQ LPWGIALYQD DWHQGVIGIL ASRIKDKYHR PVIAFAEASD NEVKGSARSI KGLHMRDLLE LISSRHPGLI PKFGGHAMAA GLSLAKADVS KFQTVFDDTV RELLSPELLT GEILSDGELP IEYLTLETAN LIRASGPWGQ GFEEPLFDGH FRLLQQRLVG EKHLKMMVET ECGRLMLDAI AFNVDLKLWP DATVRHVHLA YRLDVNEFRG NQSLQLLVEQ IDAK
|
| |