| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2734 |
|---|
| Symbol | |
|---|
| ID | 4604981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3267020 |
|---|
| End bp | 3268066 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639782145 |
|---|
| Product | putative oxidoreductase protein |
|---|
| Protein accession | YP_928606 |
|---|
| Protein GI | 119775866 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGAC TATTACAGGG GTTTCTCGGC ACCGAGTTAC CTATCATTCA GGCCCCCATG
GCCGGGGTGC AGGACAGTGA ACTCACCATT GCGGTATGCA GCGCCGGAGG TTTGGGGTCC
TTGCCCTGCG GCATGTTGAG CAATGAAGTG CTGGAGGCTG AAGTGCGCCG GATTCAGGCG
GCAACCACGG CTCCTTTTAA TCTCAACTTT TTTTGTCATC GGGTGAGTGA TTACCCGGAC
CCAATCCGTC GCCGCTGGCA GTCTTTGCTG GCACCTTACT TTGACGAGCT GGGCGTTACC
GCGTCTTCGG GGCCAGCCAG GGCAAGTCGC CAGCCTTTCA GTCATGATGT CGCCGATGTG
ATAGAAACGG CGAGACCGGC CTTTGTCAGC TTTCATTTTG GGCTTCCGGA CAAGGCCTTA
TTGCAGCGGG TAAAAAGTTG GGGCACCAGG GTACTGTCGT CGGCAACGAC CCTTGATGAG
GCACTGTGGC TGGAGGCCAA TGGCGCCGAC GGCATCATAC TGCAGGGGCT TGAGGCCGGT
GGTCACAGAG GCATGTTTTT GTCGATGGAT TTGGCTACCC AGCAGCCGCT TCATGGGTTG
CTGGCACTGG CAAAGGATAA ACTGACGCTG CCCGTGATTG CCGCAGGTGG TCTTGGCTCT
GCTACCGACA TCAATGGTGC GCTCAAGGCC GGTGCCGATG CGGTGCAGAT TGGTACTGCA
TACCTGCTGT GCAGTGAAGC CAAAACCTCA GCTATCCATC GCCGCGCCAT CGGTGAGCAA
CCGCTGCAAA CTCAAATCAC CACGCTTTTC TCCGGCAAGC CGGCCCGGGG CATAGTCAAT
CGCGCCATGG CAGAGCTTGG TGCCATGCAT GAGGCCGTGC CGCCATTTCC CTTTGCCTCC
ATCGATATGG GGCTGCTGCG ACAGGCAGCG GAGCAGCTGG GTAAGGGAGA TTTCTCCCCT
CTGTGGTGTG GGCAAAATAC CTCAGGCTGT CGTGCTATCC CGGCTGCGGA AATGACCCGT
CGTCTTGCGG CAGGGGTGAT GTTCTGA
|
|---|
| Protein sequence | MSRLLQGFLG TELPIIQAPM AGVQDSELTI AVCSAGGLGS LPCGMLSNEV LEAEVRRIQA
ATTAPFNLNF FCHRVSDYPD PIRRRWQSLL APYFDELGVT ASSGPARASR QPFSHDVADV
IETARPAFVS FHFGLPDKAL LQRVKSWGTR VLSSATTLDE ALWLEANGAD GIILQGLEAG
GHRGMFLSMD LATQQPLHGL LALAKDKLTL PVIAAGGLGS ATDINGALKA GADAVQIGTA
YLLCSEAKTS AIHRRAIGEQ PLQTQITTLF SGKPARGIVN RAMAELGAMH EAVPPFPFAS
IDMGLLRQAA EQLGKGDFSP LWCGQNTSGC RAIPAAEMTR RLAAGVMF
|
|---|
| |