| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2676 |
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| Symbol | |
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| ID | 4604923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3201868 |
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| End bp | 3205044 |
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| Gene Length | 3177 bp |
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| Protein Length | 1058 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782087 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_928548 |
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| Protein GI | 119775808 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0314551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAAG CGAGTGAAGT ACTGGCAGGT CGTTACGACA ACGCCAATCT CGACGAATTG
TTCAGTCTGA TCAGTCAAAA CTACATCGTT GATGAGGAAG CCTACCTCAA AGAACTGATT
GCGCTGGTTC CGTCGAGCGA CGAAGAAATC GCGCGCATCA CCAGCCGTGC CCACGATCTG
GTGGCCAAGG TTCGCCAATA CGAGAAGAAA GGTTTGATGG TTGGCATTGA TGCCTTCCTG
CAACAGTACT CTCTGGAAAC CCAGGAAGGC ATTATCCTCA TGTGCCTGGC CGAGGCGCTG
CTGCGTATTC CGGATGCCGA AACCGCCGAC GCCCTGATTG CCGACAAGCT TTCCGGTGCC
AAGTGGGATG AGCACATGTC CAAGAGCGAC TCCGTGCTGG TAAACGCCTC CACCTGGGGC
CTTATGCTCA CAGGCAAAAT CGTCCAACTC GACAAAAACC TCGACGGCAC CCCAAGCAAT
CTGCTGAGCC GTCTGGTCAA CCGTCTGGGT GAGCCTGTTA TTCGTCAGGC CATGTACGCC
GCCATGAAAA TCATGGGCAA GCAATTCGTA CTGGGTCGTA CCATCGAAGA AGGCCTGAAA
AACGCCGCCG AGAAGCGCAA GCTGGGTTAT ACCCACTCCT ACGACATGCT TGGCGAAGCC
GCCCTGACCA TGAAGGATGC CGACAAGTAC TACCGCGATT ACGCCAATGC CATTCAGGCA
CTGGGTACGG CCAAGTTTGA TGAGAGCGAA GCCCCACGTC CCACCATTTC CATCAAGCTG
TCTGCCCTGC ACCCACGCTA CGAAGTAGCC AACGAAGACA GGGTGATGAC CGAGCTGTAC
GCCACCCTGA TAAAGCTTAT CGAGCAGGCA CGAAGTCTTA ACGTGGGCAT CCAGATTGAT
GCTGAAGAAG TAGACCGTCT CGAACTGTCG CTGAAACTCT TCAAAAAGCT GTATCAGTCT
GACGCCGCCA AAGGCTGGGG TTTACTGGGC ATTGTGGTGC AGGCTTACTC CAAGCGTGCT
TTGCCAGTGT TGATGTGGCT GACCCGCCTT GCTAAAGAAC AGGGCGATGA AATCCCACTA
CGCCTGGTAA AAGGCGCTTA CTGGGACAGC GAACTCAAGT GGGCTCAGCA AGCCGGTGAA
GCAGGCTACC CGCTGTTTAC CCGCAAGGCT GCCACCGACG TGTCTTACCT TGCCTGTGCC
CGTTATCTGC TGTCTGAAGC CACCCGCGGC GTTATCTATC CGCAGTTTGC CAGTCACAAC
GCCCAGACGG TTGCCGCCAT CACCGCCATG GTGGGCGATC GCAAGTTTGA ATTCCAGCGT
CTGCACGGTA TGGGTCAGGA ACTCTATGAC ACTGTGCTGG CCGAAGCCGC CGTACCCACA
GTGCGAATCT ACGCCCCGAT AGGCGCCCAC AAGGACCTGC TGCCTTACCT GGTGCGTCGT
CTGCTTGAAA ACGGTGCCAA CACCTCATTT GTACACAAAC TGGTGGATCC CAAGACGCCC
ATCGAGTCGC TGGTGACCCA CCCGCTGAAA ACCCTGCAAG GCTACAAGAC CCTGGCAAAC
AACAAAATAG TTAAGCCCGC CGACATCTTC GGTGCTGAGC GTAAAAATTC CAAGGGACTC
AATATGAACA TCATTTCCGA ATCCGAGCCA TTCTTCGCTG CTCTGGAGAA ATTCAAGGAC
ACCCAGTGGA GCGCAGGTCC GCTGGTCAAC GGTGAGACCC TGTCGGGTGA AGTGCGTGAC
GTAGTCAGCC CATACAACAC CACCCTGAAA GTGGGTCAGG TCGCCTTCGC AAACGAAGCC
ACCATAGAAC AGGCCATTGC CGGTGCCGAC AAGGCATTTG CCAGCTGGTG CCGCACCCCG
GTTGAGACCC GCGCCAATGC ACTGCAAAAG CTGGCGGATC TGCTGGAAGA AAACCGCGAA
GAGCTGATTG CCCTGTGTAC CCGTGAAGCC GGTAAGAGCA TTCAGGACGG TATCGACGAA
GTGCGTGAAG CCGTGGACTT CTGCCGCTAC TACGCGGTGC AGGCCAAGAA GATGATGAGC
AAGCCTGAGC TGCTCCCAGG CCCAACAGGC GAGCTGAACG AACTCTTCCT GCAGGGTCGT
GGCGTGTTTG TGTGTATCAG CCCATGGAAC TTCCCGCTGG CCATCTTCCT CGGTCAGGTA
GCCGCCGCAC TGGCAACCGG CAACACAGTG ATTGCCAAGC CAGCAGAGCA AACCTGCCTG
ATTGGTTTCC GCGCGGTGCA GCTGGCCCAT GAAGCCGGCA TTCCCAAAGA CGTACTGCAA
TTCCTGCCGG GTACAGGTGC CGTAGTGGGT GCCAAGCTGA CCTCCGATGA GCGCATCGGC
GGCGTGTGCT TTACCGGTTC TACCACCACA GCCAAGGTTA TCAACCGTGC GCTGGCCGGT
CGTGATGGCG CCATCATCCC GCTGATTGCC GAAACCGGTG GTCAGAACGC CATGGTGGTT
GACTCCACCA GCCAGCCTGA ACAGGTAGTG AACGATGTAG TATCTTCAGC CTTTACCAGC
GCCGGTCAGC GCTGCTCTGC CCTGCGTGTA CTCTATTTGC AGGAAGACAT CGCCGAACGC
GTTCTGGACG TGCTCAAGGG TGCAATGGAT GAGCTGACTC TGGGTAACCC AGGCTCAGTG
AAGACCGACG TAGGCCCTGT GATTGATGCT GCCGCCAAGG CCAACCTGAA TGCTCACATC
GACCATATCA AGCAGGTGGG TCGTCTCATT CACCAACTGA GCCTGCCGGA AGGCACCGAA
AACGGTCACT TCGTGGCGCC AACTGCGGTG GAAATCGATT CCATCAAGGT ACTGACCAAA
GAAAACTTCG GTCCTATCCT GCACGTGGTG CGCTACAAGG CCGCCGGCCT GCAGAAGGTT
ATCGATGACA TCAACTCTAC CGGCTTCGGT CTGACTCTGG GTATCCACAG CCGTAACGAG
GGCCATGCCC TGGAAGTGGC CGACAAGGTA AACGTGGGTA ACGTGTATAT CAACCGTAAC
CAAATCGGCG CCGTGGTGGG TGTGCAGCCA TTCGGTGGCC AGGGCCTGTC CGGCACTGGT
CCAAAAGCCG GTGGTCCACA CTACCTGACG CGCTTTGTAA CCGAGAAGAC CCGCACCAAC
AACATCACCG CCATCGGTGG TAATGCGACC CTGCTGTCTC TGGGCGACGC CGACTGA
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| Protein sequence | MFKASEVLAG RYDNANLDEL FSLISQNYIV DEEAYLKELI ALVPSSDEEI ARITSRAHDL
VAKVRQYEKK GLMVGIDAFL QQYSLETQEG IILMCLAEAL LRIPDAETAD ALIADKLSGA
KWDEHMSKSD SVLVNASTWG LMLTGKIVQL DKNLDGTPSN LLSRLVNRLG EPVIRQAMYA
AMKIMGKQFV LGRTIEEGLK NAAEKRKLGY THSYDMLGEA ALTMKDADKY YRDYANAIQA
LGTAKFDESE APRPTISIKL SALHPRYEVA NEDRVMTELY ATLIKLIEQA RSLNVGIQID
AEEVDRLELS LKLFKKLYQS DAAKGWGLLG IVVQAYSKRA LPVLMWLTRL AKEQGDEIPL
RLVKGAYWDS ELKWAQQAGE AGYPLFTRKA ATDVSYLACA RYLLSEATRG VIYPQFASHN
AQTVAAITAM VGDRKFEFQR LHGMGQELYD TVLAEAAVPT VRIYAPIGAH KDLLPYLVRR
LLENGANTSF VHKLVDPKTP IESLVTHPLK TLQGYKTLAN NKIVKPADIF GAERKNSKGL
NMNIISESEP FFAALEKFKD TQWSAGPLVN GETLSGEVRD VVSPYNTTLK VGQVAFANEA
TIEQAIAGAD KAFASWCRTP VETRANALQK LADLLEENRE ELIALCTREA GKSIQDGIDE
VREAVDFCRY YAVQAKKMMS KPELLPGPTG ELNELFLQGR GVFVCISPWN FPLAIFLGQV
AAALATGNTV IAKPAEQTCL IGFRAVQLAH EAGIPKDVLQ FLPGTGAVVG AKLTSDERIG
GVCFTGSTTT AKVINRALAG RDGAIIPLIA ETGGQNAMVV DSTSQPEQVV NDVVSSAFTS
AGQRCSALRV LYLQEDIAER VLDVLKGAMD ELTLGNPGSV KTDVGPVIDA AAKANLNAHI
DHIKQVGRLI HQLSLPEGTE NGHFVAPTAV EIDSIKVLTK ENFGPILHVV RYKAAGLQKV
IDDINSTGFG LTLGIHSRNE GHALEVADKV NVGNVYINRN QIGAVVGVQP FGGQGLSGTG
PKAGGPHYLT RFVTEKTRTN NITAIGGNAT LLSLGDAD
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