| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2666 |
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| Symbol | |
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| ID | 4604913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3192162 |
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| End bp | 3193877 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782077 |
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| Product | spermidine synthase |
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| Protein accession | YP_928538 |
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| Protein GI | 119775798 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00544767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTGG CACAGGACCT GCCTCAGCCG TTGACCCCGG CCAAACACCT CGGCCGCCTG
GATGATGCGC TGCTATTGGG GATCATGGCG CTTTTGGCCG GGTGCGGCCT TATTTACGAG
TATCTGCTGA GCCATTATGC CGGGCGGATC CTCGGCGCCA TGGAAGCCGC CATTTACACC
ATGATTGGCC TGATGATTGT AGCCATGGGT GCAGGTGCCT TTGCTGCCCG GGCGATTCGC
AATCCCTTTG TCGGTTTTGC CTTGCTGGAA CTGACGGTGG CCCTGCTTGG TGCCTCCAGC
GTACTGTTTT GCGCCGCCGC CATCGGTCTC ACCCAGAGAT TGCCCCAGGT GCTGGCTGAC
ACCTTTGGTT TGCCGCCGGA CCTTTTGCCA ACCGGCGGAT TTCTGGGGCA GATACAACAG
CTGATGCAGT ATCTGCCCTA TCTGGTGGGC ACCTTACTTG GGCTGTTAAT CGGCATGGAG
ATCCCACTTA TTGCCAGAGT TCGCCAGGCA CTGTCCGATG AGCATCTGCT GCACAATGCC
GGCACCATTT ACGGTGCCGA TTATCTGGGT GCAGGGGTTG GGGCCGCTAT CTGGGTGGGT
CTGATGCTGG CGATGGATAT TCAGCTTGCC GCCGCCCTGA CGGCCAGTGT GAATCTCTTG
GCAGGTTTGG CGTTTATTCT GCGTTTCAGA ACGCGTCTGA CGGGCTTTAC CTGGCTGCTG
CTTGGGCATA TTCTGGCATC CTTTGCCCTT CTGCTGTTGG CACTTAAAGG CCCGGCACTG
GAGCAGGATT TTAATAATCT GCTCTACAAA GACCGGGTAA TTTACTCGCC GGCAACCCGT
TTTCAGCAAC TGGTATTCAC CGAGCGGCTC AGGGGCAAGG CGCCCCCTGT GTATTCCCTG
TATCTGAATG GCCGATTGCA GTTTTCCACT CAGGATGAGG CCATATATCA CGGCTTTCTG
GTGTGGCCGG CAATGATGGC AGCAACCAGA CACGACAGAG TACTCATTAT CGGTGGCGGT
GACGGCATGG CCGCCCGGGA TGTGCTCAGA TGGCAACCAG ACGAAGTGGT GTTGATGGAC
CTGGATGAAC AGCTGGTTCG CCTGTTTCAG TCACCGGCTG AGGATATGCC ACCGCGCTTG
TCCAACGCAC TGCTGACGCA GAATGTCGGG GCACTGCAGG ACCCGAGACT CACGCTGGTG
TTTGATGATG CCTTTAATGG CGTAGACAGG CTTATCGAGG CGGGCCGCCA CTTTGATGTG
GTGATTGTTG ACTTGCCGGA CCCAAGTCAT CCGGATCTCT CCAAACTCTA TTCGGATCTC
TTTTACCGCA AACTAAAAGA GCTGCTGAGC CACGATGGCG CCATTGCGAT TCAATCTACC
TCCCCCTGGC ATGCCACCCG AGCCTTCCTG AGTGTGGGCA ACACCCTTGA GTCGGCTGGA
TTCAACATTG CCCGCTACCA CCAAAACGTA CCCAGCTTCG GTGAGTGGGG CTGGACGCTC
GGCACCCTGT CGGGCTCGGC CAAAGACAAG GTGATGGCGG CAGAGCCCAT GCCCCATCCC
TGGCTCAGCA AAGAGATGAT AAGTGCCTCT TTTGCTTTTC CACCTGGATT TGAAGAGCGG
GCTCTGGCGG TGGACATCAA CCGATTCGGC TCACAGGTGA TCTACCAATA TCATCAGGAA
GCCTGGCAGG AAGAGAGCGG TATCAATTTG TTTTAA
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| Protein sequence | MALAQDLPQP LTPAKHLGRL DDALLLGIMA LLAGCGLIYE YLLSHYAGRI LGAMEAAIYT
MIGLMIVAMG AGAFAARAIR NPFVGFALLE LTVALLGASS VLFCAAAIGL TQRLPQVLAD
TFGLPPDLLP TGGFLGQIQQ LMQYLPYLVG TLLGLLIGME IPLIARVRQA LSDEHLLHNA
GTIYGADYLG AGVGAAIWVG LMLAMDIQLA AALTASVNLL AGLAFILRFR TRLTGFTWLL
LGHILASFAL LLLALKGPAL EQDFNNLLYK DRVIYSPATR FQQLVFTERL RGKAPPVYSL
YLNGRLQFST QDEAIYHGFL VWPAMMAATR HDRVLIIGGG DGMAARDVLR WQPDEVVLMD
LDEQLVRLFQ SPAEDMPPRL SNALLTQNVG ALQDPRLTLV FDDAFNGVDR LIEAGRHFDV
VIVDLPDPSH PDLSKLYSDL FYRKLKELLS HDGAIAIQST SPWHATRAFL SVGNTLESAG
FNIARYHQNV PSFGEWGWTL GTLSGSAKDK VMAAEPMPHP WLSKEMISAS FAFPPGFEER
ALAVDINRFG SQVIYQYHQE AWQEESGINL F
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