| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2662 |
|---|
| Symbol | |
|---|
| ID | 4604909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3186293 |
|---|
| End bp | 3187216 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639782073 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_928534 |
|---|
| Protein GI | 119775794 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCCC CTTCCCTCGG CACTGAGCAG GTATTCCCCC AACAGGCCTT GCTGGATCCC
GTGCTGCTGC GGGCCTTCGT TGCGGTGGCC GACAGCGGCA GCTTTACCCG GGCCGCTGCC
GCTACCCACT TAACCCAATC CACGGTCAGC CAGCAGCTAA AGCGGCTCGA GCAGCAATTG
GGCTGCGAGC TACTTAGCCG TAAGGGGCGC TATGCCATGC CAACCGCAGA CGGAGAAAGG
CTTTTGGGTT ATGCACGGCA AATTTTGGCC CTGATGGCCG AGGCCGGCAT GACGCCCGCA
CAGCCGCCCC TACTGAGGCT CGCTGTGGCA GAAGATTTTG CCGGAACCGC CCTGATGCCC
ATCCTGAAAA AGCTCATCAC ACGCTTTCCC AGCGTAAAGC TCGAGGTGCA ATCGGGCCTC
AGTAAACCGC TTTATCAGGC ATTTCAGGAA GGTGTGGTGG AATTGGCACT CATTAAACAG
CGTCAGGGAG AGCACCCGGC CAAAGCCTGC TGGCCAGAGG CGCTGAGCTG GCTTGCCGCC
GCCGACTGGC AAGCTGTGAA AGCGGGAGAG CCAGTGCCCC TGATTGCTTT TCCGGCAGGG
GGCCTGTATC GCAACGAAAT GGCTCAGCTG CTGGACGAAG CCGGGATCCC CTGGCGACTG
GTATATAGCA GCAATTCCCT CGAGGGCGTG CTGTGCGCCG TGGCCGCCGG GATGGGTGTC
AGTTTGTTAC CCAGCCGCTT TATCAGGGCC AGGGAGCATA GAGAGATAAC AGCGCTGCCA
CGGGCAACCG CTATGGAGCT GGCGCTGCAT CTTGCCAGTT CTCCCGGGGC TGAACTGCAG
TGGCTGGCGG ATGAAATAGG CGCTTATTGC GACCGGCTCT CCAGCGGCGG CTCGTCAGTG
TCGTGCCCCA ACACATCGGC ATAA
|
|---|
| Protein sequence | MSSPSLGTEQ VFPQQALLDP VLLRAFVAVA DSGSFTRAAA ATHLTQSTVS QQLKRLEQQL
GCELLSRKGR YAMPTADGER LLGYARQILA LMAEAGMTPA QPPLLRLAVA EDFAGTALMP
ILKKLITRFP SVKLEVQSGL SKPLYQAFQE GVVELALIKQ RQGEHPAKAC WPEALSWLAA
ADWQAVKAGE PVPLIAFPAG GLYRNEMAQL LDEAGIPWRL VYSSNSLEGV LCAVAAGMGV
SLLPSRFIRA REHREITALP RATAMELALH LASSPGAELQ WLADEIGAYC DRLSSGGSSV
SCPNTSA
|
|---|
| |