| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2646 |
|---|
| Symbol | |
|---|
| ID | 4604893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3170420 |
|---|
| End bp | 3170968 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639782057 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_928518 |
|---|
| Protein GI | 119775778 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG0662] Mannose-6-phosphate isomerase
[COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGATATCG GAGCCAGTCT CAAAGCAGTC CGGAAGATGA AAGGCCTGTC TCAGCGTGAG
CTTGCCAAGC GTGCCGGTGT GACCAACAGT ACCATCTCAA TGATCGAGAA AAACAGCGTG
AGCCCGTCGG TGAGCTCGCT GAAAAAAGTG TTGGCCGGCA TTCCTATGTC ACTGGTGGAG
TTTTTCTCCA TCGGCGACTC GGCCTCTGCA GAGCAAAAAA TTGTTTACCG CGCCGACGAG
TTGTTGGATA TAGGTACGGG CCCCCTGGAG TTCAAGCTGA TTGGCCGTGA TTATCCCAAC
AGGGCCATGT CAGTGATGAG TGAGATTTAT CCTCCCGGAG CAGATACTGG TGAGGAGATG
CTCAAGCACG TCGGGGAAGA GGCTGCGCTG GTCATTGAAG GTAAATTCGA GCTGACTGTT
GGCGAAGAAG TGTTTGTGCT TGAAGCCGGC GACAGTTATT ACTTCAACAG TGAATTGCCC
CACAGGTTCA GAAATCCCTT CGATGAGCCC TGTCATCTGG TCAGTGCCAC AACACCTGCC
AACTTCTGA
|
|---|
| Protein sequence | MDIGASLKAV RKMKGLSQRE LAKRAGVTNS TISMIEKNSV SPSVSSLKKV LAGIPMSLVE
FFSIGDSASA EQKIVYRADE LLDIGTGPLE FKLIGRDYPN RAMSVMSEIY PPGADTGEEM
LKHVGEEAAL VIEGKFELTV GEEVFVLEAG DSYYFNSELP HRFRNPFDEP CHLVSATTPA
NF
|
|---|
| |