Gene Sama_2646 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2646 
Symbol 
ID4604893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3170420 
End bp3170968 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content52% 
IMG OID639782057 
ProductXRE family transcriptional regulator 
Protein accessionYP_928518 
Protein GI119775778 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG0662] Mannose-6-phosphate isomerase
[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGATATCG GAGCCAGTCT CAAAGCAGTC CGGAAGATGA AAGGCCTGTC TCAGCGTGAG 
CTTGCCAAGC GTGCCGGTGT GACCAACAGT ACCATCTCAA TGATCGAGAA AAACAGCGTG
AGCCCGTCGG TGAGCTCGCT GAAAAAAGTG TTGGCCGGCA TTCCTATGTC ACTGGTGGAG
TTTTTCTCCA TCGGCGACTC GGCCTCTGCA GAGCAAAAAA TTGTTTACCG CGCCGACGAG
TTGTTGGATA TAGGTACGGG CCCCCTGGAG TTCAAGCTGA TTGGCCGTGA TTATCCCAAC
AGGGCCATGT CAGTGATGAG TGAGATTTAT CCTCCCGGAG CAGATACTGG TGAGGAGATG
CTCAAGCACG TCGGGGAAGA GGCTGCGCTG GTCATTGAAG GTAAATTCGA GCTGACTGTT
GGCGAAGAAG TGTTTGTGCT TGAAGCCGGC GACAGTTATT ACTTCAACAG TGAATTGCCC
CACAGGTTCA GAAATCCCTT CGATGAGCCC TGTCATCTGG TCAGTGCCAC AACACCTGCC
AACTTCTGA
 
Protein sequence
MDIGASLKAV RKMKGLSQRE LAKRAGVTNS TISMIEKNSV SPSVSSLKKV LAGIPMSLVE 
FFSIGDSASA EQKIVYRADE LLDIGTGPLE FKLIGRDYPN RAMSVMSEIY PPGADTGEEM
LKHVGEEAAL VIEGKFELTV GEEVFVLEAG DSYYFNSELP HRFRNPFDEP CHLVSATTPA
NF