| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2642 |
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| Symbol | |
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| ID | 4604889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3165155 |
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| End bp | 3166255 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639782053 |
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| Product | polyamine ABC transporter, periplasmic polyamine-binding protein |
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| Protein accession | YP_928514 |
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| Protein GI | 119775774 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00909614 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTAT TACACAAAAT GACAGCTCTG GCTTTGGTTA CCGCCGGTGT TCTGGGAAGC
GCTGCGGTAT CGGCTGAAGA AGTTGTTCGC GTCTATAACT GGTCTGACTA TATCGCCGAA
GACACCCTGG AAAACTTCCA GAAGGAAACC GGCATCCGCG TAATCTACGA TGTGTTCGAC
ACCAACGAAG TGCTGGAAGC CAAGCTGCTT TCAGGCCGCA GCGGTTACGA TCTGGTTGTG
CCATCAGCCC ACTTCCTTGC CAAGCAGATT AAAGCCGGCG CCTTTATGAA GCTGGACAAG
TCCAAGCTGA CAAACGAAAA GCACCTCAAC AAGAATCTGA TGACCCAGCT GCAAAAGAGC
GATCCGGGTA ACGAGCACGC CGTGCCTTAC CTGTGGGGCA CCACCGGCAT CGGCTTCAAC
GTGGCCAAGG TAAAAGAAGT GCTGGGTGAA GATGCACCGG TGGATTCCTG GGACTTGATT
TTCAACCCAG CCAATGCTGA AAAGCTGGCC AAGTGCGGTA TTGCCGTGCT GGATTCACCC
GATGAAATCC TGCCACCTGC GCTGAACTAT CTGGGCCTGA ACCCTAACAG CACTGATCCT
GCCGACTATG AAAAAGCCGG TGAAGTACTG CTGAAAATCC GTCCTTACCT CAAGTATTTC
CACTCTTCAC GCTACATCTC TGACTTGGCC AATGGCGAAA TCTGTGCCGC CATCGGTTGG
TCCGGTGACG TACTGCAGGC TCAGGCCCGT GCCGAAGAGG CCGGTAACGG CCAGCAAGTG
GATTATCGCA TCCCTAAAGA AGGTGCACCT TTGTGGTTTG ACATGATGGC TATCCCTGCC
GATGCTGCCA ACGCTGACAA TGCGCTGACC TTTATGAATT ACCTGATGCG CCCAGAGGTC
ATCGCTTCCA TCAGTAACTA TGTGGCTTAT GCCAACGCCA ACGATGGTTC TAACCCTCTG
TTGGACGAGG AAGTTGCCAA AAACCCCGCT GTGTATCCAT CAGAAGAAAC ACTCGCCAAG
CTCTACCTGG GTGAAGTGCG TCCTATGAAG ACCCAGCGCG CCATGACCCG GATCTGGACC
AAGATCAAAT CTGGTCAGTG A
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| Protein sequence | MKLLHKMTAL ALVTAGVLGS AAVSAEEVVR VYNWSDYIAE DTLENFQKET GIRVIYDVFD
TNEVLEAKLL SGRSGYDLVV PSAHFLAKQI KAGAFMKLDK SKLTNEKHLN KNLMTQLQKS
DPGNEHAVPY LWGTTGIGFN VAKVKEVLGE DAPVDSWDLI FNPANAEKLA KCGIAVLDSP
DEILPPALNY LGLNPNSTDP ADYEKAGEVL LKIRPYLKYF HSSRYISDLA NGEICAAIGW
SGDVLQAQAR AEEAGNGQQV DYRIPKEGAP LWFDMMAIPA DAANADNALT FMNYLMRPEV
IASISNYVAY ANANDGSNPL LDEEVAKNPA VYPSEETLAK LYLGEVRPMK TQRAMTRIWT
KIKSGQ
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