| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2628 |
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| Symbol | |
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| ID | 4604875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3147751 |
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| End bp | 3148650 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639782039 |
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| Product | transcriptional activator protein MetR |
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| Protein accession | YP_928500 |
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| Protein GI | 119775760 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00235565 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGAGC TAAGACACCT TCGAACCCTG ATGGCACTGA AAGAGAGTGG CAGCCTGGCG
GCCGCGGCCA AAAAGCGCTT TGTCACCCAG TCTGCTTTGT CTCATCAGAT TAAAGAGCTG
GAAACCCGCA TCAATTCCCC CGTGTTCGTG AGAAAGAGCA AGCCCCTGTC TTTTACTCAG
GAAGGCGCCC GACTGCTGAA TCTGGCCGAA GAAATTCTGC CGCGAGTGAT GGAAACCGAG
TTTGTATTGA AGAAAGGTCT GGAGACCGAC GCCCATTTGC TCAAGGTCGG TATTGAGTGT
CACAGCTGCT TTCGCTGGCT GATGCCGGTT ATAGAGACTT TCAGGGCTGA ATATCCGGAT
GCGGACTTGG ACTTATCGAG CCGTCACCTG TTCGACTCGC TGAACGCACT GGAGTCCGGT
GAGCTGGACA TTGTACTGAC ATCCGATCCC GTCCCCGGGC ATCAGCTGGC TTATCAGCAC
CTGTTCGACT TTGAAGTTCG CCTGGTGGTG GCCAAAGAGC ATCCGCTGGC GAGCAAGAGC
CTGGTGCTGC CAAAGGATCT GGCGGGCTTG CCCATTATAA GCTACCCCGT ACCCTTGGAA
CGCCTTGACC TGTTCCGCTT GTTTTTAGAG CCAGCCGGTA TTGAGCCCGG TGTGCAAAAG
AGCTGCGATC TGACCTCGGT CCTGTTTCAA CGCATCGCCT GTCAGGATGG TATAGCCGCC
CTGCCCAGTT GGTCCATCAG CGAGGCCCAG GGCCTTAGCC TCACCAGTTT GCGCCTCGGC
GCTGAGGGCG TAAAACGCCC ACTGTTTGGC GCCTATCGCC GTGGCAGTGC CAACTCCCGC
CAACTGCAAC GGTACCTTGA ACTGGTGGCA GCAGAAGGTC TGGCTCGCCA ATCACAGTAA
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| Protein sequence | MIELRHLRTL MALKESGSLA AAAKKRFVTQ SALSHQIKEL ETRINSPVFV RKSKPLSFTQ
EGARLLNLAE EILPRVMETE FVLKKGLETD AHLLKVGIEC HSCFRWLMPV IETFRAEYPD
ADLDLSSRHL FDSLNALESG ELDIVLTSDP VPGHQLAYQH LFDFEVRLVV AKEHPLASKS
LVLPKDLAGL PIISYPVPLE RLDLFRLFLE PAGIEPGVQK SCDLTSVLFQ RIACQDGIAA
LPSWSISEAQ GLSLTSLRLG AEGVKRPLFG AYRRGSANSR QLQRYLELVA AEGLARQSQ
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