| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2623 |
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| Symbol | |
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| ID | 4604870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3141040 |
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| End bp | 3142920 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639782034 |
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| Product | cyclic nucleotide phosphodiesterase, putative |
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| Protein accession | YP_928495 |
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| Protein GI | 119775755 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.616722 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTG ATTTTCCAAA GTCCATTCTT TGGGCCATTT TTTTACTTAT CCTCTGGCTG
CCCGCGCATG CCGGTGATTT GACGCTGGAC GAGATAGACA GGCTGTTCAG CCAACTGGAA
AGCGATCCAT CTCAGTTTGA TTCCATTCCC GAGCAGGTTG AACTGCTGAA ACAAAATATT
GTTGCCGACG ATATTCCTCG CACACTGCGC CTTAAACGAA CGCTCTGTTG GTCAACTGAC
CTGACTCAGG AGAATGCCCT GGAGCATGGG CTGACTTATG CCAACGAACA ACTGGCACTG
CCGATGGTTC AGGCGGATAT CCCAACTCAA GCCGATTTGA TGCTCTGCCG GGGCTGGTTA
TTACAGCAGA AAGGCGTTAT GGCCGACGCC ATGAGTGATT ACAATCGCTC GGTTTCTCTT
GCCTATCAAT CGGAAGAGCC CCGTCTGATT GCAGATAGCC GCAGTCTCAG GGGAGCCCTG
CTTTCCTATC AGGGCAACTT TGCCGATGCG CTGGAAGACC TGATTACGTC CCAACATCTT
TATGAGAGCC TCAATTTAAC CTACTGGGCC AGATACAATC TCCTTGAGCT TGCCACCAGT
TATCGCCGTT TCGGCGACCC GGACACGGCT ATTCGGTATT ACGAAGACCT CTTGCAAAAG
TACACTGAAG CCAAAGACAC GTTTGCCATG GTAGGCGTCA AGGCCGAAAT GGCCATGGCG
TATGAAACGC TGGAGGATTT CGAGAAAGCG CTCGTCTACT ACAAAGATGT ATTGGCTGGC
TGGCTGGCGC AAAAAGACGA GATCAGTGTG GCCGCCACCC GGGTAAATAT GAGTGGCACC
CTCATAAAAC TCGGCAGACT TAAAGAGGCA AAGGCTGAGT TGGAACTGGC CTTTCCCGAA
TTAAAACCCG AGCACGTAGG GGTTTACGCA TTCGAGCATC TGTTTATGGC GCAAATACTG
CTCGCAGAGG GTAAACCGCT GGATGCGCTG CCGCTGCTGG AAGTTGGCGA AGAAAGCTTT
CGCAATGCGC AAAACAGCCG TGGATTAGCC GAGCTCTATG CCACCAAAAG CCAGGTCTAC
GCGGCATTGG AAGATTGGGC CAACGCCTTT TATACCCTTG AGATACAAAA CGCACTCCAT
ACTCAACTGG ACAACCAGTT GCAGTCACAA CGCACCACAG AGATGCGAAC CCGATTCGAT
ACCGACAGAA TTGAAAATGA AAACCGCCAG CTGGTTGCTT ATCAACGCTT GCGGGAAAAA
GAAATGGCCA TACTGCAGGA AAATAAATTT CTGCAATTCG TCATTATCGT TATGGGCATC
ATCATCCTCA GCATTGTGTC TATTTTTGCT TACAAGCAGG CACAGCGCTC TAAACTGATG
GAACGGCTCG CCCTCACCGA TCACCTGACA CAACTTGCCA ATCGTCGGCA CACCTACCAT
GAAGGCGAGA TCATGTTCCG AAGCGCAAGA CCTGGCAGTC CGTTGTCTGT CATCTTGTTT
GATGCCGACC ATTTCAAAAA AATCAATGAC CACTTCGGTC ATGATGTTGG TGATAAAGTC
TTGATTGCCA TGGCTCAAAG TAGCGCTGGG CAAATGCGTA GAGGCGATTT GGTTGGCCGC
ATTGGCGGTG AAGAGTTTCT GGCGTTACTG CCACACACCA CTTTGGAACA GGCGGTTGAA
ATTGCTGAGC GCCTGCGGTT AACCATAGAA ACGACGGATT TGTCAGAGGT CGCCCCTGGC
CTTGGCATGA GCATCAGCGC GGGGGTCGCC ACCCTGGATA GCAGCAGAGA TAAAAACTTT
TCCAGCTTCC TGAACCGGGC AGATCACGCG CTTTATCGTG CCAAACACAA TGGTCGTAAC
CGGGTGGAAA AAGACGATTA A
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| Protein sequence | MKFDFPKSIL WAIFLLILWL PAHAGDLTLD EIDRLFSQLE SDPSQFDSIP EQVELLKQNI
VADDIPRTLR LKRTLCWSTD LTQENALEHG LTYANEQLAL PMVQADIPTQ ADLMLCRGWL
LQQKGVMADA MSDYNRSVSL AYQSEEPRLI ADSRSLRGAL LSYQGNFADA LEDLITSQHL
YESLNLTYWA RYNLLELATS YRRFGDPDTA IRYYEDLLQK YTEAKDTFAM VGVKAEMAMA
YETLEDFEKA LVYYKDVLAG WLAQKDEISV AATRVNMSGT LIKLGRLKEA KAELELAFPE
LKPEHVGVYA FEHLFMAQIL LAEGKPLDAL PLLEVGEESF RNAQNSRGLA ELYATKSQVY
AALEDWANAF YTLEIQNALH TQLDNQLQSQ RTTEMRTRFD TDRIENENRQ LVAYQRLREK
EMAILQENKF LQFVIIVMGI IILSIVSIFA YKQAQRSKLM ERLALTDHLT QLANRRHTYH
EGEIMFRSAR PGSPLSVILF DADHFKKIND HFGHDVGDKV LIAMAQSSAG QMRRGDLVGR
IGGEEFLALL PHTTLEQAVE IAERLRLTIE TTDLSEVAPG LGMSISAGVA TLDSSRDKNF
SSFLNRADHA LYRAKHNGRN RVEKDD
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