| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2606 |
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| Symbol | |
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| ID | 4604853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3119410 |
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| End bp | 3120261 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639782013 |
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| Product | putative lipoprotein |
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| Protein accession | YP_928478 |
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| Protein GI | 119775738 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4105] DNA uptake lipoprotein |
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| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000151596 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTATCTG TTACAATCGG ATGTTTTCCA TTTTATCGTG AAATGGAAGA ATTCTTAACT
ACAACTTCAA AAGAATTGAA TTCAAGTATG TATAAATTTG CCAAAGGCTC GGCCGTTGCC
TTGTTCGCGC TGGCGCTGGG CGCTTGTAGC AGCTCAGGAA GTCAGGAAGA TCTCGTACTG
AGCCAGAAGT CACCTGAGGC ACTTTATGCC CAGGCCAGAA CCTCCATGGA ACTGGGGAAT
TTCTCCAAAG CCGTTAAAAG CCTGGAAGCC CTGGATTCCC GTTTCCCCTT CGGTGCGCAT
AAGACTCAGG TTCAGTTGGA CATGATCTAT GCCTATTATA AGCTGGACGA CACTCCCCAG
GCGATTGCCA ACATTGACCG CTTCCTGCGC CTCAACCCTA CTCACCCCGA TGTAGACTAT
GTTCAGTATA TGCGGGGCTT GGTCAACATG CAGGCCGACA GTTATCTGTT CCATGACATG
ATGAACATAG ATCGTACCGA TCGCGATCCC AAAAATGCCA TGGATGCCTT CAAGGACTTT
GAGCGTCTTA TCAAGACCTA TCCAAACAGC AAGTATGCGG CCGATGCCCA TCAACGGATG
CAGTTTTTGA AAAACCGTTT GGCTCGTTAC TCCATTCAGG TAGCCGAATA CTACGTCAAG
ATGAATGCCT GGAGTGCCGC AGCCGTTCGT GCTCAAACTG TGATGGAGTC TTTCCCGGGT
ACGCCTTCAA CAGAACGTGC GCTGGAAATT ATGGCCCAGT CCTACGATGA GCTTGGCCAG
GAACAGCTTA AAAAGCATGT CCTGATGGTG ATGCAGGAAA ATTTCCCTGC CAATGAGATG
CTGCAAAACT AA
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| Protein sequence | MLSVTIGCFP FYREMEEFLT TTSKELNSSM YKFAKGSAVA LFALALGACS SSGSQEDLVL
SQKSPEALYA QARTSMELGN FSKAVKSLEA LDSRFPFGAH KTQVQLDMIY AYYKLDDTPQ
AIANIDRFLR LNPTHPDVDY VQYMRGLVNM QADSYLFHDM MNIDRTDRDP KNAMDAFKDF
ERLIKTYPNS KYAADAHQRM QFLKNRLARY SIQVAEYYVK MNAWSAAAVR AQTVMESFPG
TPSTERALEI MAQSYDELGQ EQLKKHVLMV MQENFPANEM LQN
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