| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2605 |
|---|
| Symbol | |
|---|
| ID | 4604852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3118400 |
|---|
| End bp | 3119374 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639782012 |
|---|
| Product | pseudouridylate synthase |
|---|
| Protein accession | YP_928477 |
|---|
| Protein GI | 119775737 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000283334 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAG AGATTAATCT AAAAAGCGAG ATTTCAGCAA CACAAACGGG GCTGAGACTG
GATCAAGCCA TTGCGGAGTT GTTTCCCGAC TATTCGCGCA CCCGGCTGAA AGAATGGATC
CTCGGCGGCA ACGTCTATGT GGATGGTGTC GTTGTGACTA AACCCAGAGA AAAGGTACTC
GAATCTCAAG TGATTGAGAT TGAGGCCACC CTGGAAGAAG AAGTTGCGGC AGAGGCCCAG
GAAATCGATC TCGATATCGT CTACGAAGAC GACCATATTC TGGTGATCAA TAAGCAGGCC
GGTCTGGTCG TGCATCCCGG TGCCGGTAAT GCCGATGGCA CTCTGATGAA CGCACTTTTG
CATCACTGCC CTGAAATAGA ACATGTGCCA AGAGCCGGAA TTATCCATCG TCTCGATAAA
GACACCACAG GGTTGATGGT GGTGGCAAAA ACTGTAGAGG CCCAAACTCA TTTGGTCGCT
GCGCTGCAGG CCCGTGATAT CACCCGTGAA TACGAAGCCA TAGTGCTTGG TACCATGACC
GCTGGCGGTA CTGTGGATGC ACCCATTGGT CGTCACCCGA CCAAGCGCAC TCATATGGCG
GTACACCACA GTGGCCGTCC TTCGGTGACG CATTACCGGG TGGCCGAAAA GTTCCGTGCC
CATACCCGCT TGCGCCTCCG TCTGGAAACC GGCCGTACTC ACCAAATTCG TGTCCATATG
GCTCACATTG GTCATGTGCT GGTGGGTGAC CCTGTATATG GTGGCCGTCC AAAACCACCC
AAAAATGCCA GCCCGGAGTT TTTTGAGGTT CTGAAAAATT TCACTCGTCA GGCACTGCAT
GCCGTCAGGC TCGAGCTAGC GCACCCGGTC ACCATGGAAA TCATGTCCTT CAATGCCCCA
ATTCCTGAAG ACATGGTGCT GTTGACCAAG GCCCTTCGTA AAGATACTGA GGCCAATCCT
CAGGACCATA TCTAA
|
|---|
| Protein sequence | MTQEINLKSE ISATQTGLRL DQAIAELFPD YSRTRLKEWI LGGNVYVDGV VVTKPREKVL
ESQVIEIEAT LEEEVAAEAQ EIDLDIVYED DHILVINKQA GLVVHPGAGN ADGTLMNALL
HHCPEIEHVP RAGIIHRLDK DTTGLMVVAK TVEAQTHLVA ALQARDITRE YEAIVLGTMT
AGGTVDAPIG RHPTKRTHMA VHHSGRPSVT HYRVAEKFRA HTRLRLRLET GRTHQIRVHM
AHIGHVLVGD PVYGGRPKPP KNASPEFFEV LKNFTRQALH AVRLELAHPV TMEIMSFNAP
IPEDMVLLTK ALRKDTEANP QDHI
|
|---|
| |