Gene Sama_2592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2592 
Symbol 
ID4604839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3100253 
End bp3101431 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content52% 
IMG OID639781993 
ProductSerine-type D-Ala-D-Ala carboxypeptidase 
Protein accessionYP_928464 
Protein GI119775724 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1686] D-alanyl-D-alanine carboxypeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000836445 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.819629 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAAG TAATCAAACC TAGCGCCCCA AAATCGATGT TGCTCCTGGC CATTATGTCT 
GCCAGCGCCT TTGCAGCACC ACCGACCGTC GTTCCAGATG CCCCTTCCGT GGCCGCCAAA
GCTTATGTGT TGATGGATTA TCACACCGGC CAGATCATTG CTGAAGAACA TGCTTATGAG
CAGCTGAATC CGGCCAGCCT TACCAAGATG ATGACCAGCT ATGTGATTGG TCATGAAATG
AAAGTGGGCA ACATCTCACC GGAAGATGAC GTCACCATCA CCAAAAACGC CTGGTCAAAG
AACTTTCCCG ATTCCTCAAA GATGTTCATC GAGGTAGGCA AAACAGTAAA AGCCGCCGAT
TTGAACCGTG GCATCATCAT CCAGTCCGGT AACGACGCCT GTGTGGCCAT GGCTGAGCAC
ATTGCCGGTA CCGAAGATGC TTTCGTTGAT ATGATGAACT CCTGGGCGAA GCAACTCGGT
ATGACCGACA GCTACTTTGA AAACAGCCAC GGTCTGGACT CTGACAACCA CAAAACCACC
GCCTATGACA TGGCCATTCT GGGTGCCGCC CTTATCCGTG ACGTGCCGGA AGAGTACCGC
ATCTATTCCG AAAAAGAGTT CACCTTTAAC GGTATCAAGC AATACAACCG TAACGGCCTC
TTATGGGACA AGAGCATGAA CGTGGACGGT ATCAAGACTG GCCACACCTC TGGCGCGGGT
TATAACCTGG TGGCCTCTGC CACACAGGAC GACATGCGTT TGATTTCTGT GGTCATGGGC
GCCAGCAGCG AGGCTTCCCG TAAGGCCGAA AGCAAAAAGC TACTGTCCTA TGGTTTCCGC
TTCTTCGAAA CCGTCACCCC CTACAAGGCC GGTGACAGCT TCGTAAATCA ACAAATTTGG
TATGGCGATC GTGAAAGTGT CGACCTGGGC GTCGCTACCG ACACTCCTCT GACCATTCGT
CGCGGCAAAG GCAAAGAACT TCAGGCCAAC TTCGAACTGA CCAAGCCATT GGAAGCTCCA
CTGGCCAAAG GCGAAGTAGT GGGCCGCGTG TATTTCCAGT TGGATGGCAA AGACATAGCA
CAATTCCCGC TGGTAACACT GCAGGAAGTG AATGAAGGCA GCTGGTTCTC CAAGCTGATG
GATTACTTCA AGCAGCTCGT CGCCAGCTGG CTGAGCTAA
 
Protein sequence
MMKVIKPSAP KSMLLLAIMS ASAFAAPPTV VPDAPSVAAK AYVLMDYHTG QIIAEEHAYE 
QLNPASLTKM MTSYVIGHEM KVGNISPEDD VTITKNAWSK NFPDSSKMFI EVGKTVKAAD
LNRGIIIQSG NDACVAMAEH IAGTEDAFVD MMNSWAKQLG MTDSYFENSH GLDSDNHKTT
AYDMAILGAA LIRDVPEEYR IYSEKEFTFN GIKQYNRNGL LWDKSMNVDG IKTGHTSGAG
YNLVASATQD DMRLISVVMG ASSEASRKAE SKKLLSYGFR FFETVTPYKA GDSFVNQQIW
YGDRESVDLG VATDTPLTIR RGKGKELQAN FELTKPLEAP LAKGEVVGRV YFQLDGKDIA
QFPLVTLQEV NEGSWFSKLM DYFKQLVASW LS