| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2580 |
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| Symbol | |
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| ID | 4604827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3087745 |
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| End bp | 3088986 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639781981 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_928452 |
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| Protein GI | 119775712 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0784] FOG: CheY-like receiver
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.465232 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGGGC AACAACAAAT CCTGATAATC GACGATTCTG AAGCCATTTT AATGGTGGTA
AAAACCATGC TTTCCCGCAT GGGTTTTGAA AAAATCACCA CCATGACTTC GGCGACAAAG
GCACTGGCTG TCGTGGGTCT GGAGCCGGCG CGTTTTCAGA TAATATTAAC TGACCTTCGG
ATGCCTGATA CCGACGGCCT GGATGTACTC AGGAGGCTTG GCGAAATGGG CTTCAAAGGC
GCAGTGGCCA TCATTTCTGA AATGGACAGG CGCATCATCA ACCTGGCAGC CGACATAGCC
CGGCGTCATC GACTCCACAT GATTGGCTGC ATTTGCAAAC CAGTACAACT GGACGATTTA
TCGGCGCTGG TTGAAAAAGC CACTGAGCTG CGTGTCACCC TTGAACCTCC TGCACAGCTT
CTGACCCATG AGCAAGTTCA GGCCGCATTC AATCAAATTC AGGTGATCCC CTACTATCAA
CCCAAGGTTG ATTTAAACAG GTGTCAGGTT GTGGGCGTCG AAGCGCTGGC GCGCATTCGC
TTACCGGGTG AAGTCAATGC GCTTCGGCCC TGTCGCTTTA TGCCAGTCAT TCAAGAATAT
GGCATGCTGC CTCAGCTATC CCAACGCATG CTGCAGCAGG CATGCAAAGA CTTACCCACT
ATAAAATCCA TCCTCGGCAA CGACATCAAA GTCAGTTTGA ACATCAGTCC GGAAGAGCTT
GAGAATACCT ATCTGGCAGA CAGTCTGGAG CATATCTGGC GTAAGAGTGG TGCCAGTAAC
GATTCGCTGG TGCTTGAAAT CACCGAAGAG CATTACATAC ACAACAGTGC ACAACTCGAA
TCCCTGAATC GGTTGCGCCT GAGAGGCTTT GGGTTGTCGT TGGATGACTT TGGCACAGGA
TTTACCAACA TCAATCAACT GAGAGATTTG CCCTACACAG AAGTCAAAAT CGATCGTTCA
CTTATCATCA ATATTCACAG AGACAGCTTT TGTCAGGCCA TTTTGAATGG CCTTGTTGAA
ATTGCGCGCC AGCTGGGTAT TACTTTGGTG GCCGAAGGCA TAGAGCACAT GGACGAACTC
AAATACCTGA TGCAGACTTA CCCGGCACTG ATATTGCAGG GGTACCTCAT CAGTCTGCCC
CGTTCACTCG ATACCCTGAA TACCTGGCAC AAGGGGTGGC AGCATCAATT TGGCAATCGA
TCCCATATCC ACCGGCATCA GCCCCCCGCC AACGAAGACT GA
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| Protein sequence | MLGQQQILII DDSEAILMVV KTMLSRMGFE KITTMTSATK ALAVVGLEPA RFQIILTDLR
MPDTDGLDVL RRLGEMGFKG AVAIISEMDR RIINLAADIA RRHRLHMIGC ICKPVQLDDL
SALVEKATEL RVTLEPPAQL LTHEQVQAAF NQIQVIPYYQ PKVDLNRCQV VGVEALARIR
LPGEVNALRP CRFMPVIQEY GMLPQLSQRM LQQACKDLPT IKSILGNDIK VSLNISPEEL
ENTYLADSLE HIWRKSGASN DSLVLEITEE HYIHNSAQLE SLNRLRLRGF GLSLDDFGTG
FTNINQLRDL PYTEVKIDRS LIINIHRDSF CQAILNGLVE IARQLGITLV AEGIEHMDEL
KYLMQTYPAL ILQGYLISLP RSLDTLNTWH KGWQHQFGNR SHIHRHQPPA NED
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