| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2578 |
|---|
| Symbol | |
|---|
| ID | 4604825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3085101 |
|---|
| End bp | 3085979 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639781979 |
|---|
| Product | magnesium and cobalt efflux protein CorC |
|---|
| Protein accession | YP_928450 |
|---|
| Protein GI | 119775710 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4535] Putative Mg2+ and Co2+ transporter CorC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0721434 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACG ACATACCCCC GAGTAGCAAC GCCCAAAAGA AAGGCTGGTT AGAACGCGTT
AGTCAGTTAT TCCAGGGCGA ACCTCAAAAT CGTGACGATC TGGTGGAAGT GATCCACGAT
GCCGAGCAAC GCGACCTCAT CACCGAAGAC ACCCGTGAAA TGATCCAGGG TGTACTGGAA
GTCTCAGACC TGCGTGTCAG GGACATCATG ATCCCCCGCG CCCAGATTGT GGCCATTAAA
ATCGACAGCA CAGTGGAAGA ACTGTTGGCT ACCGTCATAG GGTCGGCCCA TTCACGCTTC
CCCGTAGTTA ACGACGATAA AGACCACATC GAAGGCATAC TGCTGGCCAA GGATCTGATC
AAGTACGGAT TTAATAACAG TGATGAACCC TTTGCGCTGG AGAAGGTGAT CCGCCCTGCC
GTGGTGGTGC CCGAAAGCAA GCGCGTGGAT GTGCTACTCA AGGAGTTTCG CTCCCAACGT
TACCATATGG CCATTGTCGT GGATGAATAC GGCGGTGTAT CCGGTCTGGT AACCATCGAG
GATATTCTCG AAGAAATCGT GGGTGAAATC GAAGATGAAT TCGACCATGA CAGTGTGGAA
GAGACCGAAA TCCGCAAGGT CAACAACACT GTGTTTATGG TCAAGGCGCT GACGGCGATT
GAAGACTTCA ACGAAGAATT CGGTACCGAC TTCTCCGACG AAGAATTTGA TACTGTTGGC
GGTATGGTGG CCCACGCCTT TGGCCATCTG CCCGAACGTA ATGAACAAAT CAGTATCGGC
GGCATCGAGT TCAAAGTGAT CAGTGCCGAC ACACGGCGTC TTATTCAGCT GAGGGTCAAG
TTTCCCGACC CGGAGCAGGC TGAGATAGCC GAGATCTGA
|
|---|
| Protein sequence | MSDDIPPSSN AQKKGWLERV SQLFQGEPQN RDDLVEVIHD AEQRDLITED TREMIQGVLE
VSDLRVRDIM IPRAQIVAIK IDSTVEELLA TVIGSAHSRF PVVNDDKDHI EGILLAKDLI
KYGFNNSDEP FALEKVIRPA VVVPESKRVD VLLKEFRSQR YHMAIVVDEY GGVSGLVTIE
DILEEIVGEI EDEFDHDSVE ETEIRKVNNT VFMVKALTAI EDFNEEFGTD FSDEEFDTVG
GMVAHAFGHL PERNEQISIG GIEFKVISAD TRRLIQLRVK FPDPEQAEIA EI
|
|---|
| |