Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2543 |
Symbol | |
ID | 4604790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3053009 |
End bp | 3054370 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639781938 |
Product | C4 dicarboxylate ABC transporter permease |
Protein accession | YP_928415 |
Protein GI | 119775675 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.62617 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCTGC TGCTGTTTCT CATCATTTGT CTGGTGTTGA TGCTGGGCTA CCCGGTGGCA CTCACCCTGG GTGGTGTGGC CTTTTTGTTC GCCCTGTTCG CCAGTTTTTT TGGGGCTTTC GATATGGGGC TGTTTGGCCT CTTGCCCAAT CGCATCTTCG GCATTTTGAA TAATCAAATT TTGATGGCGG TGCCGCTGTT TGTGTTTATG GGCGTTGTGC TTGAAAAGTC CAGGATTGCC GAACAGTTAC TCACCACCAT GGGTGCACTC TTGGGGCGTT TTCGAGGCGG CCTGATTTTC AGCGTATTTT TTGTCGGCGT GCTGCTTGCT GCCAGCACCG GCATTGTCGG TGCCACTGTG GTCACCATGG GGCTGATGTC GCTGCCAACC CTGCTTAAGC GCGGTTACAG CCCCGAACTC AGCGCCGGTG CCATCTGCGC CACCGGCACC CTCGGGCAAA TTATCCCCCC TTCCATCGCC TTGGTGCTGC TGGGAGACGT CCTGTCCAAT GCCTATCAGC AGGCTCAGCT GAAAATGGGC ATTTTTAATC CCAAGTCTGT GTCTGTGGGC GATCTCTTTG CCGGTGCTCT GATCCCGGGC TTGATGTTGG TGAGCCTCTA TATGTTCTAC ACCCTGTTTC GCTTATGGCG CTCTCCGGCA GATTTTGGCA GTGCGATTAC GCAGGATTAC GAGCCCGCGT CGCTTGCCAG GGTGATTTCA GCTTTGTTGC CACCGCTGCT GCTGATTTTC TTGGTACTCG GCTCCATTTT GGCCGGTATT GCCACGCCAA CGGAGGCGGC GTCTGTGGGG GCCGCAGGCG CCTTGTTGAT TGCGCTGCTC AAACGCCAAA TGAGCATGCT GGCCTTGAAG GAGGTGATGC AAAGCACGGT CAAAATCACA TCCATGGTGT TTTTGATCCT GATTGGTGCC TCTGTGTTTT CGCTGGTCTT CAGGGGGCTT GGCGGGGAAG AGCTGATACA TAACCTCTTT GCCAATATGC CCGGTGGCGT TGTGGGTGCC ATGTTACTGG TGATGACGGT TATTTTCGTG CTCGGTTTTA TCCTCGATTT TATCGAAATC ACGTTTGTGG TAGTGCCACT GGTTGCGCCG ATCTTGCTTG CCATGGGGCT GGATCCTGTG TGGCTTGGGA TCATGATTGC ACTCAATTTG CAAACGTCCT TCTTAACCCC GCCCTTTGGT TTTGCGCTCT TCTATTTACG GGGCGTCAGT GGAGACAGTG TTTCGAGCGG ACAAATTTAT CGCGGGGTGA TCCCATTCGT CATTCTGCAG TTGCTGATGT TGATATTACT TGGGATTTGG CCGGCACTTG CCACCTGGCT GCCGTCGGTT TTGTATGGCT GA
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Protein sequence | MALLLFLIIC LVLMLGYPVA LTLGGVAFLF ALFASFFGAF DMGLFGLLPN RIFGILNNQI LMAVPLFVFM GVVLEKSRIA EQLLTTMGAL LGRFRGGLIF SVFFVGVLLA ASTGIVGATV VTMGLMSLPT LLKRGYSPEL SAGAICATGT LGQIIPPSIA LVLLGDVLSN AYQQAQLKMG IFNPKSVSVG DLFAGALIPG LMLVSLYMFY TLFRLWRSPA DFGSAITQDY EPASLARVIS ALLPPLLLIF LVLGSILAGI ATPTEAASVG AAGALLIALL KRQMSMLALK EVMQSTVKIT SMVFLILIGA SVFSLVFRGL GGEELIHNLF ANMPGGVVGA MLLVMTVIFV LGFILDFIEI TFVVVPLVAP ILLAMGLDPV WLGIMIALNL QTSFLTPPFG FALFYLRGVS GDSVSSGQIY RGVIPFVILQ LLMLILLGIW PALATWLPSV LYG
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