Gene Sama_2543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2543 
Symbol 
ID4604790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3053009 
End bp3054370 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content54% 
IMG OID639781938 
ProductC4 dicarboxylate ABC transporter permease 
Protein accessionYP_928415 
Protein GI119775675 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component 
TIGRFAM ID[TIGR00786] TRAP transporter, DctM subunit 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.62617 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCTGC TGCTGTTTCT CATCATTTGT CTGGTGTTGA TGCTGGGCTA CCCGGTGGCA 
CTCACCCTGG GTGGTGTGGC CTTTTTGTTC GCCCTGTTCG CCAGTTTTTT TGGGGCTTTC
GATATGGGGC TGTTTGGCCT CTTGCCCAAT CGCATCTTCG GCATTTTGAA TAATCAAATT
TTGATGGCGG TGCCGCTGTT TGTGTTTATG GGCGTTGTGC TTGAAAAGTC CAGGATTGCC
GAACAGTTAC TCACCACCAT GGGTGCACTC TTGGGGCGTT TTCGAGGCGG CCTGATTTTC
AGCGTATTTT TTGTCGGCGT GCTGCTTGCT GCCAGCACCG GCATTGTCGG TGCCACTGTG
GTCACCATGG GGCTGATGTC GCTGCCAACC CTGCTTAAGC GCGGTTACAG CCCCGAACTC
AGCGCCGGTG CCATCTGCGC CACCGGCACC CTCGGGCAAA TTATCCCCCC TTCCATCGCC
TTGGTGCTGC TGGGAGACGT CCTGTCCAAT GCCTATCAGC AGGCTCAGCT GAAAATGGGC
ATTTTTAATC CCAAGTCTGT GTCTGTGGGC GATCTCTTTG CCGGTGCTCT GATCCCGGGC
TTGATGTTGG TGAGCCTCTA TATGTTCTAC ACCCTGTTTC GCTTATGGCG CTCTCCGGCA
GATTTTGGCA GTGCGATTAC GCAGGATTAC GAGCCCGCGT CGCTTGCCAG GGTGATTTCA
GCTTTGTTGC CACCGCTGCT GCTGATTTTC TTGGTACTCG GCTCCATTTT GGCCGGTATT
GCCACGCCAA CGGAGGCGGC GTCTGTGGGG GCCGCAGGCG CCTTGTTGAT TGCGCTGCTC
AAACGCCAAA TGAGCATGCT GGCCTTGAAG GAGGTGATGC AAAGCACGGT CAAAATCACA
TCCATGGTGT TTTTGATCCT GATTGGTGCC TCTGTGTTTT CGCTGGTCTT CAGGGGGCTT
GGCGGGGAAG AGCTGATACA TAACCTCTTT GCCAATATGC CCGGTGGCGT TGTGGGTGCC
ATGTTACTGG TGATGACGGT TATTTTCGTG CTCGGTTTTA TCCTCGATTT TATCGAAATC
ACGTTTGTGG TAGTGCCACT GGTTGCGCCG ATCTTGCTTG CCATGGGGCT GGATCCTGTG
TGGCTTGGGA TCATGATTGC ACTCAATTTG CAAACGTCCT TCTTAACCCC GCCCTTTGGT
TTTGCGCTCT TCTATTTACG GGGCGTCAGT GGAGACAGTG TTTCGAGCGG ACAAATTTAT
CGCGGGGTGA TCCCATTCGT CATTCTGCAG TTGCTGATGT TGATATTACT TGGGATTTGG
CCGGCACTTG CCACCTGGCT GCCGTCGGTT TTGTATGGCT GA
 
Protein sequence
MALLLFLIIC LVLMLGYPVA LTLGGVAFLF ALFASFFGAF DMGLFGLLPN RIFGILNNQI 
LMAVPLFVFM GVVLEKSRIA EQLLTTMGAL LGRFRGGLIF SVFFVGVLLA ASTGIVGATV
VTMGLMSLPT LLKRGYSPEL SAGAICATGT LGQIIPPSIA LVLLGDVLSN AYQQAQLKMG
IFNPKSVSVG DLFAGALIPG LMLVSLYMFY TLFRLWRSPA DFGSAITQDY EPASLARVIS
ALLPPLLLIF LVLGSILAGI ATPTEAASVG AAGALLIALL KRQMSMLALK EVMQSTVKIT
SMVFLILIGA SVFSLVFRGL GGEELIHNLF ANMPGGVVGA MLLVMTVIFV LGFILDFIEI
TFVVVPLVAP ILLAMGLDPV WLGIMIALNL QTSFLTPPFG FALFYLRGVS GDSVSSGQIY
RGVIPFVILQ LLMLILLGIW PALATWLPSV LYG