Gene Sama_2507 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2507 
Symbol 
ID4604754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3012071 
End bp3012871 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content57% 
IMG OID639781902 
Producthypothetical protein 
Protein accessionYP_928379 
Protein GI119775639 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00984533 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC TACTTACTCC CCTGGTGTTG CTCGGCCTTG TGAGCGGCTG TGTCACCACC 
CAATCTCCCA CGGGGCGTAG CCAAACATTA TTGTTTTCGG CCGCAGAAAT GAACCAGCTG
GGCGCTGCCT CCTTTGAAGA AATGAAGAAG CAGCAAAAAA TCAGCAAAGA CACTAAACTC
AACGCCTATG TTTCCTGCGT TGCCATGCGG GTAACAGCGG CGCTGCCCGA CCAGACTCAA
GGATGGGAAG TGGTGGTGTT TGACTCGCCG CAGGTGAATG CCTTTGCTTT GCCGGGCGGG
CACATTGGGG TGTATTCGGG CCTCTTGAAA GTCGCCGAAA ACCAGGACCA ACTGGCGGTG
GTGCTGGGTC ATGAAGTGGC CCACGTACTG GCACAGCACA GCAACGAGCA GGTGTCCCGC
ACTCAACTAA CCAACACCGG CTTGCAACTG GCGGATGTGG CACTGGGCGC CGGAGGCGTG
TCCAATCGTA ATCTCTATAT GGCCGCGCTC GGCCTTGGCA CTCAGGTGGG CTACATTCTG
CCCTACGGCA GGGCTCAGGA ATCTGAAGCC GATGTCATGG GGCTTGAGCT GATGGCTCGC
GCCGGATTTG ACCCGCGTGC TGGCACTCTG CTGTGGCAAA ACATGGCCAA AGCCGGTGGT
GACCAGGGGC CAGAGCTCTT GTCTACTCAC CCATCCCACG GCACCCGTAT TGCGGAATTG
GCCCGTCTGG AACAAAAAGT AATGCCACTG TACGAGGCCG CCAGGGCCTC CGGTGTGAAG
AACTGTCAAA TTACTAAATA A
 
Protein sequence
MKKLLTPLVL LGLVSGCVTT QSPTGRSQTL LFSAAEMNQL GAASFEEMKK QQKISKDTKL 
NAYVSCVAMR VTAALPDQTQ GWEVVVFDSP QVNAFALPGG HIGVYSGLLK VAENQDQLAV
VLGHEVAHVL AQHSNEQVSR TQLTNTGLQL ADVALGAGGV SNRNLYMAAL GLGTQVGYIL
PYGRAQESEA DVMGLELMAR AGFDPRAGTL LWQNMAKAGG DQGPELLSTH PSHGTRIAEL
ARLEQKVMPL YEAARASGVK NCQITK