Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2507 |
Symbol | |
ID | 4604754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3012071 |
End bp | 3012871 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639781902 |
Product | hypothetical protein |
Protein accession | YP_928379 |
Protein GI | 119775639 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00984533 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAC TACTTACTCC CCTGGTGTTG CTCGGCCTTG TGAGCGGCTG TGTCACCACC CAATCTCCCA CGGGGCGTAG CCAAACATTA TTGTTTTCGG CCGCAGAAAT GAACCAGCTG GGCGCTGCCT CCTTTGAAGA AATGAAGAAG CAGCAAAAAA TCAGCAAAGA CACTAAACTC AACGCCTATG TTTCCTGCGT TGCCATGCGG GTAACAGCGG CGCTGCCCGA CCAGACTCAA GGATGGGAAG TGGTGGTGTT TGACTCGCCG CAGGTGAATG CCTTTGCTTT GCCGGGCGGG CACATTGGGG TGTATTCGGG CCTCTTGAAA GTCGCCGAAA ACCAGGACCA ACTGGCGGTG GTGCTGGGTC ATGAAGTGGC CCACGTACTG GCACAGCACA GCAACGAGCA GGTGTCCCGC ACTCAACTAA CCAACACCGG CTTGCAACTG GCGGATGTGG CACTGGGCGC CGGAGGCGTG TCCAATCGTA ATCTCTATAT GGCCGCGCTC GGCCTTGGCA CTCAGGTGGG CTACATTCTG CCCTACGGCA GGGCTCAGGA ATCTGAAGCC GATGTCATGG GGCTTGAGCT GATGGCTCGC GCCGGATTTG ACCCGCGTGC TGGCACTCTG CTGTGGCAAA ACATGGCCAA AGCCGGTGGT GACCAGGGGC CAGAGCTCTT GTCTACTCAC CCATCCCACG GCACCCGTAT TGCGGAATTG GCCCGTCTGG AACAAAAAGT AATGCCACTG TACGAGGCCG CCAGGGCCTC CGGTGTGAAG AACTGTCAAA TTACTAAATA A
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Protein sequence | MKKLLTPLVL LGLVSGCVTT QSPTGRSQTL LFSAAEMNQL GAASFEEMKK QQKISKDTKL NAYVSCVAMR VTAALPDQTQ GWEVVVFDSP QVNAFALPGG HIGVYSGLLK VAENQDQLAV VLGHEVAHVL AQHSNEQVSR TQLTNTGLQL ADVALGAGGV SNRNLYMAAL GLGTQVGYIL PYGRAQESEA DVMGLELMAR AGFDPRAGTL LWQNMAKAGG DQGPELLSTH PSHGTRIAEL ARLEQKVMPL YEAARASGVK NCQITK
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