Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2499 |
Symbol | |
ID | 4604746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3000542 |
End bp | 3002377 |
Gene Length | 1836 bp |
Protein Length | 611 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639781894 |
Product | protein-export membrane protein SecD |
Protein accession | YP_928371 |
Protein GI | 119775631 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.101855 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGACCG ATCAACTGCT TCACCGCGGA CGGCGTGGCA ACGCCTCCAA AACCCTAAAC CGTACTTCCC CCTGGCTGGC GCTGACCTTT TCGGTGGCGC TGATACTGCT GGCGCTGTCG GCACTGCCGA GCTTTTTTGG AGAAAGGGCG GCTCTGACTC TGGGTAAGGA TGCCTGGATT GCACCAGAGC AGGCTGGGCA AATCCTAACC GAAGCCCATA TCGGCGTAGC CGCCATCAGC GCCCGGGACA AGGGCATTCA GATCATCCTC AGCGATGAAA ATCAGCAGAT GGCGGCGCGC CAGTTATTGG CAGAAGCAGC CCAGAACCCT GCCGCTATTA CGCTGTCCAT GGTACCGGCG GCGCCCCCTT GGCTTAATCG ATTGGGCCTG TCTCCCATCA AGCTGGGGCT GGACCTGCGC GGTGGGGTGC AATTTTTAAT GCAGGTCGAC ACGGCGCCTG TATTCAAGGC ACAGGGCGAA GCCCTGAAAG GGGCGATTCG CCAGGTAATA AGAGACAAGG GACTGAGGTC AGTTGCCGTG CTGAAAGATG AAAGCAGACT GACTGAAAAT CCCGACGCCC TCAAGTTATC CGGCGCCACC CAAAGTCTTG CTGAACTCAG AGGCTGGCTG TTACTGAATT ACCCACAGTG GCAGAGCGAG TCTGCCGACG GCGCGATACT GTTACGCCTG AAGGATACAG AGCGTGTGGC TCTGGTGTCG CAAACCCTTA AAGAAAATAT CAGCATCATG CGTGGTCGTA TTCAGGAGCT TGGGATCACT GAGGCTATCG TGCAGCGCCA CGGAGAAAGC CGGATTCTGG TGGAGTTGCC CGGCGTGCAG GACCCGGTTG CAGCCAAACG GGTCATAGGT GCTACGGCAA GCTTATCGTT TCATGAGCTC AAAGAGGGGG GCACTGCGCT GCAAACGCCC TTTGGCGACG GTCGAGTGGG GCTTAATCCT GCGCCGGTTC TCGGCGGTGA GCACATAGTT GACGCCCGGT CTGGCAGTGA TGAAATGGGG CGCCCTGCGG TGAATATTGT GCTGGATACC GAGGGTGGCA AACGCATGTC TGACTTTTCC CGCGGCCATA TCGGTGAGCC CATGGCGACC CGTTACAGCG AGTACCGCGC CAGCGCCGAG GGCACGGTCA AAGACAGTCG GGTAATTTCA GTCGCTACCA TTAATAGCCA ACTGGGTAAT CGTTTCTCCA TTACCGGGCT TGGCAGCCAT GAGGAGGCGC AGGAGCTCGC GATGCTGTTG CGGGCAGGTT CGATGACGGC CCCGGTCACC ATTCAAAAGG AGCGCACCAT AGGCCCAAGC CTTGGGGCCG AGAATATTCA CAACGGCTTT GCTGCATTGG CGTTGGGTAT GGGGGCAACT CTGCTGTTTA TGGCGCTCTG GTATCGCCGC CTTGGCTGGG TGGCCAACGT GGCGCTGCTG GCCAATCTGG TGATGCTGCT TGGCCTGCTG GCGCTTATTC CCGGCGCAGT GCTCACCTTG CCGGGCATTG CGGGTTTGGT GCTTACCGTC GGCATGGCGG TGGATACCAA CGTCCTGATT TTTGAGCGTA TCCGCGACAA AATGAAGGAG GGCAGAAGCC TTGCTCTTGC CATAGACAAG GGCTTTGCCA GTGCCTTTGG CACCATAGTG GATGCCAACC TTACCACCAT GATCACAGCT CTGGTGCTGT ACGCCATCGG TAACGGGCCC ATTCAGGGAT TTGCTCTGAC GCTGGGGCTT GGGCTTGTCA CCTCAATGAT CACAGGGATT TTTATGTCAC GGCTCATCAT TAATTGGGTT TATGGCCGTG ATGAGCGTAA GGCTGTGAGG ATTTAA
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Protein sequence | MLTDQLLHRG RRGNASKTLN RTSPWLALTF SVALILLALS ALPSFFGERA ALTLGKDAWI APEQAGQILT EAHIGVAAIS ARDKGIQIIL SDENQQMAAR QLLAEAAQNP AAITLSMVPA APPWLNRLGL SPIKLGLDLR GGVQFLMQVD TAPVFKAQGE ALKGAIRQVI RDKGLRSVAV LKDESRLTEN PDALKLSGAT QSLAELRGWL LLNYPQWQSE SADGAILLRL KDTERVALVS QTLKENISIM RGRIQELGIT EAIVQRHGES RILVELPGVQ DPVAAKRVIG ATASLSFHEL KEGGTALQTP FGDGRVGLNP APVLGGEHIV DARSGSDEMG RPAVNIVLDT EGGKRMSDFS RGHIGEPMAT RYSEYRASAE GTVKDSRVIS VATINSQLGN RFSITGLGSH EEAQELAMLL RAGSMTAPVT IQKERTIGPS LGAENIHNGF AALALGMGAT LLFMALWYRR LGWVANVALL ANLVMLLGLL ALIPGAVLTL PGIAGLVLTV GMAVDTNVLI FERIRDKMKE GRSLALAIDK GFASAFGTIV DANLTTMITA LVLYAIGNGP IQGFALTLGL GLVTSMITGI FMSRLIINWV YGRDERKAVR I
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