Gene Sama_2499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2499 
Symbol 
ID4604746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3000542 
End bp3002377 
Gene Length1836 bp 
Protein Length611 aa 
Translation table11 
GC content58% 
IMG OID639781894 
Productprotein-export membrane protein SecD 
Protein accessionYP_928371 
Protein GI119775631 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.101855 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGACCG ATCAACTGCT TCACCGCGGA CGGCGTGGCA ACGCCTCCAA AACCCTAAAC 
CGTACTTCCC CCTGGCTGGC GCTGACCTTT TCGGTGGCGC TGATACTGCT GGCGCTGTCG
GCACTGCCGA GCTTTTTTGG AGAAAGGGCG GCTCTGACTC TGGGTAAGGA TGCCTGGATT
GCACCAGAGC AGGCTGGGCA AATCCTAACC GAAGCCCATA TCGGCGTAGC CGCCATCAGC
GCCCGGGACA AGGGCATTCA GATCATCCTC AGCGATGAAA ATCAGCAGAT GGCGGCGCGC
CAGTTATTGG CAGAAGCAGC CCAGAACCCT GCCGCTATTA CGCTGTCCAT GGTACCGGCG
GCGCCCCCTT GGCTTAATCG ATTGGGCCTG TCTCCCATCA AGCTGGGGCT GGACCTGCGC
GGTGGGGTGC AATTTTTAAT GCAGGTCGAC ACGGCGCCTG TATTCAAGGC ACAGGGCGAA
GCCCTGAAAG GGGCGATTCG CCAGGTAATA AGAGACAAGG GACTGAGGTC AGTTGCCGTG
CTGAAAGATG AAAGCAGACT GACTGAAAAT CCCGACGCCC TCAAGTTATC CGGCGCCACC
CAAAGTCTTG CTGAACTCAG AGGCTGGCTG TTACTGAATT ACCCACAGTG GCAGAGCGAG
TCTGCCGACG GCGCGATACT GTTACGCCTG AAGGATACAG AGCGTGTGGC TCTGGTGTCG
CAAACCCTTA AAGAAAATAT CAGCATCATG CGTGGTCGTA TTCAGGAGCT TGGGATCACT
GAGGCTATCG TGCAGCGCCA CGGAGAAAGC CGGATTCTGG TGGAGTTGCC CGGCGTGCAG
GACCCGGTTG CAGCCAAACG GGTCATAGGT GCTACGGCAA GCTTATCGTT TCATGAGCTC
AAAGAGGGGG GCACTGCGCT GCAAACGCCC TTTGGCGACG GTCGAGTGGG GCTTAATCCT
GCGCCGGTTC TCGGCGGTGA GCACATAGTT GACGCCCGGT CTGGCAGTGA TGAAATGGGG
CGCCCTGCGG TGAATATTGT GCTGGATACC GAGGGTGGCA AACGCATGTC TGACTTTTCC
CGCGGCCATA TCGGTGAGCC CATGGCGACC CGTTACAGCG AGTACCGCGC CAGCGCCGAG
GGCACGGTCA AAGACAGTCG GGTAATTTCA GTCGCTACCA TTAATAGCCA ACTGGGTAAT
CGTTTCTCCA TTACCGGGCT TGGCAGCCAT GAGGAGGCGC AGGAGCTCGC GATGCTGTTG
CGGGCAGGTT CGATGACGGC CCCGGTCACC ATTCAAAAGG AGCGCACCAT AGGCCCAAGC
CTTGGGGCCG AGAATATTCA CAACGGCTTT GCTGCATTGG CGTTGGGTAT GGGGGCAACT
CTGCTGTTTA TGGCGCTCTG GTATCGCCGC CTTGGCTGGG TGGCCAACGT GGCGCTGCTG
GCCAATCTGG TGATGCTGCT TGGCCTGCTG GCGCTTATTC CCGGCGCAGT GCTCACCTTG
CCGGGCATTG CGGGTTTGGT GCTTACCGTC GGCATGGCGG TGGATACCAA CGTCCTGATT
TTTGAGCGTA TCCGCGACAA AATGAAGGAG GGCAGAAGCC TTGCTCTTGC CATAGACAAG
GGCTTTGCCA GTGCCTTTGG CACCATAGTG GATGCCAACC TTACCACCAT GATCACAGCT
CTGGTGCTGT ACGCCATCGG TAACGGGCCC ATTCAGGGAT TTGCTCTGAC GCTGGGGCTT
GGGCTTGTCA CCTCAATGAT CACAGGGATT TTTATGTCAC GGCTCATCAT TAATTGGGTT
TATGGCCGTG ATGAGCGTAA GGCTGTGAGG ATTTAA
 
Protein sequence
MLTDQLLHRG RRGNASKTLN RTSPWLALTF SVALILLALS ALPSFFGERA ALTLGKDAWI 
APEQAGQILT EAHIGVAAIS ARDKGIQIIL SDENQQMAAR QLLAEAAQNP AAITLSMVPA
APPWLNRLGL SPIKLGLDLR GGVQFLMQVD TAPVFKAQGE ALKGAIRQVI RDKGLRSVAV
LKDESRLTEN PDALKLSGAT QSLAELRGWL LLNYPQWQSE SADGAILLRL KDTERVALVS
QTLKENISIM RGRIQELGIT EAIVQRHGES RILVELPGVQ DPVAAKRVIG ATASLSFHEL
KEGGTALQTP FGDGRVGLNP APVLGGEHIV DARSGSDEMG RPAVNIVLDT EGGKRMSDFS
RGHIGEPMAT RYSEYRASAE GTVKDSRVIS VATINSQLGN RFSITGLGSH EEAQELAMLL
RAGSMTAPVT IQKERTIGPS LGAENIHNGF AALALGMGAT LLFMALWYRR LGWVANVALL
ANLVMLLGLL ALIPGAVLTL PGIAGLVLTV GMAVDTNVLI FERIRDKMKE GRSLALAIDK
GFASAFGTIV DANLTTMITA LVLYAIGNGP IQGFALTLGL GLVTSMITGI FMSRLIINWV
YGRDERKAVR I