| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2496 |
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| Symbol | |
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| ID | 4604743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2996903 |
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| End bp | 2997619 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781891 |
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| Product | C factor cell-cell signaling protein |
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| Protein accession | YP_928368 |
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| Protein GI | 119775628 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATTC TGATTGTGGG TGGCAGCGGC GGCATTGGCA GCGCCATGGT CAAAGACGCG
TTGGCAAGGT TTCAGGATGC GGAGGTTCAC GCCACTTTTT GTACCGATAG TACCCACACC
GGCTGTAGCC ACTTTTCCGG TGTTAAATGG CACAGGCTCG ATGTTACCGA TGAGGCCGGG
ATTAAGGCAT TAAGCGAAAG CTTTGAGAGT CTGGACTGGC TTATTAACTG CGTGGGCATG
TTGCACTCCG GCAGCAAGGG GCCGGAAAAA TCCCTTTCGC AGTTTGATGG GGAGTTTTTC
CTGCACAATA TGACCTTGAA TACCTTGCCC ACCTTGCTGC TCGCCAAACA CTTCAGCGCC
AGGTTGAAAT CCAGCGTCTC GCCGCGACTG GCGGTGCTTT CTGCCCGGGT TGGCAGTATC
AGTGATAACC GCCTGGGTGG CTGGTACAGC TACCGTGCAT CCAAAGCGGC ACTCAATATG
CTGATTAAAA CCCTGGCTGT GGAGTGGCAA CGCAGCCTGA AAGGGGGCGT GGTGTTGGCC
CTCCATCCCG GCACTACCAA GACCCGCTTA TCTGAGCCGT TTCAGGCCAA TGTGCCTGGG
GACAAGCTGT TTTTACCTGA GCGGGTAGCA GCGGATTTAA TGGATATTAT TGCCAGGGCA
GAAGTTTGTG ACAGTGGCAG TTTCCTCGCT TATGACGGCG CAACAATACC TTGGTAA
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| Protein sequence | MKILIVGGSG GIGSAMVKDA LARFQDAEVH ATFCTDSTHT GCSHFSGVKW HRLDVTDEAG
IKALSESFES LDWLINCVGM LHSGSKGPEK SLSQFDGEFF LHNMTLNTLP TLLLAKHFSA
RLKSSVSPRL AVLSARVGSI SDNRLGGWYS YRASKAALNM LIKTLAVEWQ RSLKGGVVLA
LHPGTTKTRL SEPFQANVPG DKLFLPERVA ADLMDIIARA EVCDSGSFLA YDGATIPW
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