| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2477 |
|---|
| Symbol | |
|---|
| ID | 4604725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2980265 |
|---|
| End bp | 2980972 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639781873 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_928350 |
|---|
| Protein GI | 119775610 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.58685 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA TAGCAGACAG ACTCTCGCTC GCCCAGCAGC GAATCGTCCA AGCGGCGCAA
ATTTCTTCAA GAAACCCATC TGAAATCAAA TTACTTGCGG TCAGCAAAAC CAAGCCTGCC
AGCGACATTC AGGCGGCCTA CGATGCGGGT CAGCGTTTGT TTGGTGAAAA CTACGTTCAG
GAGGGGGTGC AAAAAATCAC TGACCTCACC TCCCCTTGCC CCAATATCGA GTGGCATTTT
ATCGGCCCTT TGCAGTCCAA CAAGAGCCGT CCCGTTGCAG AGCATTTTGA CTGGCTGCAC
ACCCTCGACC GGGAAAAGCT CGCCATCAGA CTCAATGAGC AGCGCCCTGC CGAACTTGCG
CCACTGAATG TGCTGATACA GGTCAATATC AGTGACGAAG AGAGTAAATC CGGTGTAAAA
CCCGAGGATA TTACAGCCCT GGCCGATGCC GTGTGCCGCC TGCCCAGGCT GCGTCTTCGG
GGACTGATGG CCATTCCCGC GCCAACCGAT GACAAGGAAA GAGCCCAAAC CGAGCTGGCC
AACATGCAAC GACTCTTTAA AAGCCTGCAA CAGAGCCACG GAACGCTCGG GCAAATAGAT
ACGCTGTCCA TGGGTATGAG CGGCGATTTG GAGCTTGCCA TAGACAACGG CAGCACCCTG
GTGCGGGTTG GCAGCGCTAT TTTTGGCGAG CGGGATTACA GCCGCTAA
|
|---|
| Protein sequence | MTTIADRLSL AQQRIVQAAQ ISSRNPSEIK LLAVSKTKPA SDIQAAYDAG QRLFGENYVQ
EGVQKITDLT SPCPNIEWHF IGPLQSNKSR PVAEHFDWLH TLDREKLAIR LNEQRPAELA
PLNVLIQVNI SDEESKSGVK PEDITALADA VCRLPRLRLR GLMAIPAPTD DKERAQTELA
NMQRLFKSLQ QSHGTLGQID TLSMGMSGDL ELAIDNGSTL VRVGSAIFGE RDYSR
|
|---|
| |