| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2476 |
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| Symbol | |
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| ID | 4604724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2979192 |
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| End bp | 2980229 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781872 |
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| Product | twitching motility protein |
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| Protein accession | YP_928349 |
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| Protein GI | 119775609 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATCA CAGAGTTACT GGCGTTTAGT GTAAAGCACA AGGCCTCGGA TCTACACCTG
TCTGCCGGTG TTCCCCCCAT GATCCGGGTG GACGGTGAAG TGCGTAAAAT CAATCTGCCT
GCACTCGATC ATGCCGGCGT ACACTCCTTG GTGTACGACA TTATGAATGA CAAGCAGCGC
AAAGACTATG AAGAGCACCT GGAAATCGAC TTTTCCTTTG AAGTGCCCAA TCTTGCCCGT
TTTCGTGTAA ACGCCTTTAA CCAGTCCCGC GGCGCTGCTG CGGTGTTTCG TACCATTCCC
AGCGAAATTC TGTCGCTGGA GCAACTGGGC GCCCCGGACA TCTTCAAAAA AATCGCCAGT
TTTCCCCGTG GTCTGGTGCT GGTGACCGGC CCAACCGGCT CAGGTAAAAG TACCACCCTG
GCGGCCATGA TTGACTATGT GAATGAAAAC CGCCACGACC ATATTCTGAC CATTGAAGAC
CCTATTGAAT TCGTGCACCA GAATAAGCAA TGTCTTATTA ACCAGCGGGA AGTGCATCGT
CATACCCACA GCTTTAACGC TGCCCTTCGC AGCGCGCTGC GTGAAGACCC CGACGTTATT
CTGGTGGGTG AGATGCGTGA CCTTGAAACT ATCCGACTGG CGATGACCGC GGCAGAAACC
GGCCACCTGG TTTTCGGCAC CCTGCACACC ACCTCGGCAG CCAAGACCAT CGACCGTGTG
GTCGACGTGT TCCCCGCCGG TGAAAAGGAC ATGGTGCGTA CCATGCTGTC TGAATCTTTG
CAGGCAGTAA TTTCCCAGAC GCTGATTAAA AAGATTGGCG GCGGCCGGGT TGCGGCCCAC
GAAATTATGA TGGGTACCCC TGCGATTCGT AACCTTATCC GTGAGGACAA GGTGGCGCAG
ATGTACTCTG CCATTCAAAC CGGTATGGCC CACGGCATGC AAACCCTCGA GCAGTGTCTG
CAGAATCTGG TGAACCGTGG CCTCATCACT CGTGAGGACG CCATGGCCAA GAGCTCCAAC
AAACAGGCAA ACTTTTAA
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| Protein sequence | MEITELLAFS VKHKASDLHL SAGVPPMIRV DGEVRKINLP ALDHAGVHSL VYDIMNDKQR
KDYEEHLEID FSFEVPNLAR FRVNAFNQSR GAAAVFRTIP SEILSLEQLG APDIFKKIAS
FPRGLVLVTG PTGSGKSTTL AAMIDYVNEN RHDHILTIED PIEFVHQNKQ CLINQREVHR
HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV
VDVFPAGEKD MVRTMLSESL QAVISQTLIK KIGGGRVAAH EIMMGTPAIR NLIREDKVAQ
MYSAIQTGMA HGMQTLEQCL QNLVNRGLIT REDAMAKSSN KQANF
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