| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2475 |
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| Symbol | |
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| ID | 4604723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2978070 |
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| End bp | 2979182 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781871 |
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| Product | twitching motility protein PilU |
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| Protein accession | YP_928348 |
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| Protein GI | 119775608 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.770515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTAC GTCCCTTTCT GAAGGTGATG GTCGAGCGCA AAGCCTCGGA TTTGTTCATC
ACCGCGGGTT TTCCTCCCAG CGCCAAAATC GACGGTGAGC TGCGGCCACT GGCGGAAAAT
GCCTTCAGCC CTGCCCAATC ACTGGACTTT GTTGAGTCCC TGATGTCAGA TGCGCAAAAG
AAAGAGTTCC ACGAGAGCCG TGAGTGTAAC TTCGCCTTTG CCGCCAAGGA CCTGGGACGT
TTCCGGGTCA GTGCTTTCTG GCAGCGTGAG TCTCCCGGTT GCGTAATGCG TCGTATCGAG
ACCAAAATTC CTGAGATGGA AGACTTGAAA CTGCCACCGG TGCTTAAAGA TCTGGTGATG
AGTAAACGCG GTCTTATCAT TATGGTGGGT GGTACAGGTA CGGGTAAATC GACGTCGCTG
GCCGCCATGG TTGGGTATCG CAATGGCCAT GAACGTGGTC ATATCCTGAC CATCGAAGAC
CCTGTGGAAT TTGTGCACGA TCACCGCAAG AGCATCATCA CCCAGCGGGA AGTGGGGATC
GATACCGAGT CCTTCGATGC GGCGCTGAAA AGCTCGCTGC GTCAGGCCCC GGACGTGATC
CTTATCGGTG AGATCCGCAG CCAGGAAACC ATGGAATTTG CGCTGTCATT TGCTGAGACA
GGTCACCTGT GTATGGCTAC CCTGCACGCC AACAACGCCA ACCAGGCGCT GGACCGTATC
ATGCACCTGG TGCCCGAAAG TAAGCACCAG CAGCTGTTGT TTGACCTGTC ACTCAACCTG
CGCGGTATTG TGGCACAGCA ATTGGTACCC AAAGCCGATG GCACGGGGCG TCGTGCGGCC
ATTGAAATTC TGATTAACAC CCCCCGTGTG TCGAGCATTA TTCAGAAAAA CGAGCTGCAT
TTGCTTAAAG ACACCATGGC CAAGTCCAAT GAGCAGGGGA TGCAGACCTT TGACCAGGCG
CTGTTCAAGC TTTATCAGGA AGGTGAAATC ACCTACGCCG ATGCCTTGCA CCATGCTGAC
TCGCCGAACG ATCTGCGTTT GATGATCAAA CTGGCGGGCT CCGAAAGTAC AGGTTCAGGC
TTCCTGGAAG GCGTGACCCT GGACATGGAT TGA
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| Protein sequence | MDVRPFLKVM VERKASDLFI TAGFPPSAKI DGELRPLAEN AFSPAQSLDF VESLMSDAQK
KEFHESRECN FAFAAKDLGR FRVSAFWQRE SPGCVMRRIE TKIPEMEDLK LPPVLKDLVM
SKRGLIIMVG GTGTGKSTSL AAMVGYRNGH ERGHILTIED PVEFVHDHRK SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRSQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHQ QLLFDLSLNL RGIVAQQLVP KADGTGRRAA IEILINTPRV SSIIQKNELH
LLKDTMAKSN EQGMQTFDQA LFKLYQEGEI TYADALHHAD SPNDLRLMIK LAGSESTGSG
FLEGVTLDMD
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