| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2457 |
|---|
| Symbol | |
|---|
| ID | 4604706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2964863 |
|---|
| End bp | 2966347 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781854 |
|---|
| Product | Na+/H+ antiporter NhaC |
|---|
| Protein accession | YP_928331 |
|---|
| Protein GI | 119775591 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1757] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR00931] Na+/H+ antiporter NhaC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCTC AGAAACAGCC CAGCCTGGTG GATGCGCTCA TCCCCGTTGT GGCCTTGATT
TCCATGCTCG CCGCCGCCGT CTACTTTTTC TCCTCAGACA GCTCCTATGG CGCAAACCAG
ATCGCACTGA TAATTGCTGC CTGTCTCGCC ATGGTGGTGG GCATTAAAAA TGGCCATTGC
TGGAAAGACA TCGAAGCAGG CATGGTACAC AGCATAGGTG TTGCCACACC GGCCTTGCTT
ATTCTGTTCA GCGTCGGCTC TCTCATCGGC GCCTGGATCC TCTCCGGTAC TGTGCCCGCC
ATGATTTACT ACGGTATGCA GGTGCTGAGT CCCGATTACT TTTATGCCGC CAGCTGTCTG
CTGTGTGCCC TTGTAGCCCT GTCCATCGGC AGCTCCTGGA CGGTGGCCGG CACCCTGGGT
ATTGCCCTTA TCGGGATTGC CCAGGCCGTG GGCCTCAGCC TCGAAATCAC AGCCGGCGCC
ATCATCAGCG GTGCTTACTT CGGTGACAAG ATGTCCCCCA TGTCGGACAC AACCAATCTC
GCACCGGCTG TCGCCGGTAC AGATATTTTC AGCCACATTC GCCATATGAC CTGGACCACG
ATCCCAAGTA TTCTGCTGGC GCTGCTGATT TTTCTGGTGA TTGGTTTGTC GGGCGACACT
GCCGGTGCAG ACACCAATCT CGATGCAACC CTGACGCTAT TGTCGGATGA GTTCCATATC
GGCCCACATT TGCTGCTGCC GTTGGCAGTG GTCATCTATC TTGCCTACCG CAAGATGCCC
GCCTTTCCCA CCGTGATTTT GGGTACCCTT GCCGGTGTGT TCTGCGCTGC GGTGTTCCAG
TTCGATGGCG TGGTGAAGCT GGCAAATGAC ACCAGTCTGA GCAGTGCATT GGCATTGATC
AAAGGCCTGT GGATTGCCAT GTTTAATGGT TACAGCGCCA GCACCGGCAA TGAAATGCTC
GACGGCCTGT TAAGCCGTGG AGGCATGTCG GGCATGGTCA ACACCGTTTG GCTAATTCTC
GCAGCCATGG CTTTTGGCGG CGTAATGGAA GCAACCGGCT TATTGAACCG ACTGCTGCAA
AGTATGCTCA GAATGGTAAA AGGCTCATCC AGTTTGGTGA TAACTACCCT GGGATGCGCC
ATCGGTGCCA ACATCATCAC CGGCGATCAG TTTATTGCCA TCATTCTGCC CGGCCGTATG
CTGAAGCTGG AGTACACCCG CCACAAGCTG GCGCCTGTTA ATCTGTCGAG GGCGCTGGAA
GACTCAGCCA CGGTCACCAG TCCACTGGTT CCCTGGAACA CCTGCGGCGC CTTTATGGCG
AGCACTCTGG GTGTGGCGAC CATCGCCTAC CTGCCCTTCG CCTTCTTCAA TCTCATCTGC
CCCGTGGTAA GCGCGGGTTA TGCCTACTTC CAGATAAAAC TGTTACCTCT GGAGGAATCC
GATATGTTGG AAAATAGCGA CGAGCTTAAA GGCGCCGAAG CCTGA
|
|---|
| Protein sequence | MTSQKQPSLV DALIPVVALI SMLAAAVYFF SSDSSYGANQ IALIIAACLA MVVGIKNGHC
WKDIEAGMVH SIGVATPALL ILFSVGSLIG AWILSGTVPA MIYYGMQVLS PDYFYAASCL
LCALVALSIG SSWTVAGTLG IALIGIAQAV GLSLEITAGA IISGAYFGDK MSPMSDTTNL
APAVAGTDIF SHIRHMTWTT IPSILLALLI FLVIGLSGDT AGADTNLDAT LTLLSDEFHI
GPHLLLPLAV VIYLAYRKMP AFPTVILGTL AGVFCAAVFQ FDGVVKLAND TSLSSALALI
KGLWIAMFNG YSASTGNEML DGLLSRGGMS GMVNTVWLIL AAMAFGGVME ATGLLNRLLQ
SMLRMVKGSS SLVITTLGCA IGANIITGDQ FIAIILPGRM LKLEYTRHKL APVNLSRALE
DSATVTSPLV PWNTCGAFMA STLGVATIAY LPFAFFNLIC PVVSAGYAYF QIKLLPLEES
DMLENSDELK GAEA
|
|---|
| |