| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2444 |
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| Symbol | |
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| ID | 4604693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2941204 |
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| End bp | 2942289 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639781841 |
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| Product | TonB domain-containing protein |
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| Protein accession | YP_928318 |
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| Protein GI | 119775578 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0960107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAA TAGGGAAAAT TGCACCGCTC CTTCTCGCCC TCAGTACCGT ATCTCCTCTG
GTCTTGGCCG ATGAGTTTTC TGATGTTTAT CGCAGTTACC AACAGGCTTG GGAAAGTGGC
AACAACATTG AGGCACGCGG TTTTGCCGAG AAGGCCTATT CATTGGGTGA GGCGAAATTT
GGCAAAGACA GTGTGGATTA TGCCAACCTA GGATTGAATC TTGCCAAGGC GCTCAGAAGC
GACAATTCGG GTGATTTTGC GGTCAATCGT CAGCGTGCCA CTGAGATTGC GACACTCAGC
CTGGCGAGCT ATGAAGCGCG ATTTGGCGAA GAGGCCACAG ATCTGATTGA TCCTCTGATG
GTGCTTGGTG ATGTGACCCA AGACAGTAAA ACCGCGAGGA AAGCCTACCA AAGAGCTTTG
AACATTGCCA AAGACTCGGG TAAGGGGGAT CTGCTGGCCT ATACCCGTAT GAATGCCTTT
AAGCGGTTGG CGAGAACTGA GTATTACACG TCAGCGGTTT ATGGCTATAT CCGCGATGCC
CATGAGTATT TTGCCCAACA CCGTCCCGCC AATAGTGCTG TCAGATTGGA GGCCACTTAC
CTGTTGGCTG GTGCTCATAT GGGCAATGCT AAATACAGAA AGGCAGAACC CTTATATCTT
GAGGTGATAG AGCAGTATAA GGTGCTTGAT TACACCCATC CCTATGCCCT GGGCGCCCAC
AGTCGTCTTG TTGAGCTGTA TGAGCGTATG GGCAAATCTG AACTTTCCAC CGAACACTGT
ATTGCCATTG GCAGCATGAA GCCCTGGGAT GATAATCAGG AGCAGACGCC ACTGTTCCGT
AAGAATCCTG AGTTTCCAAT GGAGCTTGTC AGACGAGGCA AGAGTGGCTG GGCTGAAATC
AGCTTTACGG TAGATGAAAT GGGTATGGTT CGCGACCCCA AAGTGCTCGA CTCAGAAGGT
GGCAAGGGTT TTGAAAAGGC CTCAATGGAG GCTCTCAGCG CCTGGCGCTA TGCCCCCAAG
TTTGAAGATG GCAAGCCGGT AAAAGCCGAA AGCTCAGTCA GGCTGGACTT TCGGGTAGAG
CGATAA
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| Protein sequence | MKTIGKIAPL LLALSTVSPL VLADEFSDVY RSYQQAWESG NNIEARGFAE KAYSLGEAKF
GKDSVDYANL GLNLAKALRS DNSGDFAVNR QRATEIATLS LASYEARFGE EATDLIDPLM
VLGDVTQDSK TARKAYQRAL NIAKDSGKGD LLAYTRMNAF KRLARTEYYT SAVYGYIRDA
HEYFAQHRPA NSAVRLEATY LLAGAHMGNA KYRKAEPLYL EVIEQYKVLD YTHPYALGAH
SRLVELYERM GKSELSTEHC IAIGSMKPWD DNQEQTPLFR KNPEFPMELV RRGKSGWAEI
SFTVDEMGMV RDPKVLDSEG GKGFEKASME ALSAWRYAPK FEDGKPVKAE SSVRLDFRVE
R
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