| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2436 |
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| Symbol | |
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| ID | 4604685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2929565 |
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| End bp | 2931433 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781833 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_928310 |
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| Protein GI | 119775570 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00469299 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTGG ACATTTCGAA TTATCCATTG CTTGCCCTGG CGAGCACCCC GGAAGAGCTG
CGCCAGCTGC CTCAGTCGGC ATTGAAACAG CTTTCAGATG AACTCAGGCA GTTTTTGCTG
ACCTCAGTGG GCATCTCCAG CGGCCATTTC GCCTCTGGCC TCGGCACGGT CGAACTGACC
GTTGCGCTGC ATTATGTGTA CAACACCCCC TTTGACCGTC TGATTTGGGA CGTGGGCCAT
CAGGCCTATC CCCATAAAAT TCTCACCGGC CGCCGTGACA AGATGCACAC CATTCGCCAA
AAGAATGGCC TGCACCCTTT CCCCTGGCGC GAAGAGAGTC AATACGACAC CTTCAGCGTG
GGCCATTCCA GTACCTCGAT TTCTGCCGCC CTTGGCATGG CAGTGACCGC CGAAAAGGAA
GCCCTGGGCC GCAAAGTGGT TGCCGTGATA GGTGATGGTG CCATTACCGG TGGTATGGCC
TTCGAGGCCC TCAACCATGC GGGTGACCTG CACAAAGACA TGTTAGTGGT GCTCAATGAC
AATGAGATGT CTATCTCTGA AAACGTCGGT GCACTCAATA ACCATCTGGC CAAACTCATG
TCCGGCCGCC TCTACACCAC CATTCGCGAA GGTGGCAAGA AGGTACTCAA GGGCATGCCT
GTGATTAAGG AAATGGCCAA GCGTACCGAA GAGCACCTCA AGGGTATGGT AGTACCTGGC
ACCCTGTTCG AAGAGCTTGG CTTTAACTAC ATAGGCCCCA TCGATGGCCA TGATGTTAAT
GGGCTGGTGG AAACCCTGAG TAACATGCGT GATCTCAAGG GCCCGCAGTT CCTGCACATC
ATGACTAAAA AGGGCAAGGG GTACGAACCC GCCGAGAAAG ATCCTATCGG TTGGCACGCT
GTACCCAAGT TCGACCCAAC CCAGTTCCGT AAACCGGCGA CCAAGCCTGG TTTACCCACC
TTCTCGCAAG TTTTCGGCAA GTGGCTGTGC GATATCGCCG CCAAAGACGA AAAAGTGCTC
GCCATTACCC CGGCCATGCG CGAAGGCTCA GGCATGGTGG AATTCTCCCA GCGCTTTCCA
CAACAATACT TTGATGCGGC CATCGCAGAG CAGCATGCCG TGACATTGGG CGCCGGTTTC
GCCTGTGAAG GCTACAAAGC CGTAGTGGCC ATCTATTCCA GCTTCCTGCA GCGCGGCTAC
GACCAGCTTA TCCACGATGT GGCGTTGCAA CGACTGCCAG TGCTCTTTGC CATCGACCGC
GGTGGTATTG TCGGTGCCGA TGGTGCCACC CACCAGGGCG CATTCGACTT AAGCTACATG
CGCTGCATTC CCAATATGGT GATTATGGCG CCAAGCGATG AAAACGAATG CCGCCAGATG
TTCTACACCG GTTACTGCTA CAACGAAGGC CCGAGCGCCG TGCGTTATCC AAGGGGCAGC
GCCACAGGTG CCGAGCAGAT TGAAGAGATG ACTGCCCTGC CCATCGGCAA AGGGGTAATG
CGTCGTCAGG GGCAGAAGAT TGCCATTCTG AACTTTGGCA CCACACTGGC CGCCGCCTTG
ACGGCAGCAG AGTCACTCAA TGCCACAGTG GCCGATATGC GCTTCGTTAA GCCGCTGGAT
GAAGCCTTGC TGCTGGAGCT TGCTGCCAGC CACGATGTAC TGGTGACTGT GGAAGAAAAC
GCCATTATGG GTGGCGCAGG CTCTGGTGTG CTTGAGTTCC TTGCAAGCAA GAACCGCCTG
AAGCCCCTGC TGCAAATCGG CATACCCGAT GAATTTATCA AGCACGGTGG CCCGGAAGAG
ATCCTGAGCG AGCTGGGTCT GGATGCGGCC GGTATTGAGG GGCAAATCCG CGCCTTTATT
GAGCGCTGA
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| Protein sequence | MSLDISNYPL LALASTPEEL RQLPQSALKQ LSDELRQFLL TSVGISSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDKMHTIRQ KNGLHPFPWR EESQYDTFSV
GHSSTSISAA LGMAVTAEKE ALGRKVVAVI GDGAITGGMA FEALNHAGDL HKDMLVVLND
NEMSISENVG ALNNHLAKLM SGRLYTTIRE GGKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TLFEELGFNY IGPIDGHDVN GLVETLSNMR DLKGPQFLHI MTKKGKGYEP AEKDPIGWHA
VPKFDPTQFR KPATKPGLPT FSQVFGKWLC DIAAKDEKVL AITPAMREGS GMVEFSQRFP
QQYFDAAIAE QHAVTLGAGF ACEGYKAVVA IYSSFLQRGY DQLIHDVALQ RLPVLFAIDR
GGIVGADGAT HQGAFDLSYM RCIPNMVIMA PSDENECRQM FYTGYCYNEG PSAVRYPRGS
ATGAEQIEEM TALPIGKGVM RRQGQKIAIL NFGTTLAAAL TAAESLNATV ADMRFVKPLD
EALLLELAAS HDVLVTVEEN AIMGGAGSGV LEFLASKNRL KPLLQIGIPD EFIKHGGPEE
ILSELGLDAA GIEGQIRAFI ER
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