| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2422 |
|---|
| Symbol | |
|---|
| ID | 4604671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2914473 |
|---|
| End bp | 2917301 |
|---|
| Gene Length | 2829 bp |
|---|
| Protein Length | 942 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639781819 |
|---|
| Product | peptidase S9, prolyl oligopeptidase active site region |
|---|
| Protein accession | YP_928296 |
|---|
| Protein GI | 119775556 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0305723 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGCCTT CCGCTCTATT TTGCGCTCTG GCAAGCGCCG CCAGTCTGAG TTTGCCTGCC
CTGGCAGCGC CTTCGGGCAA CATGCAAGTT CAGGACATCA TGAAATTCGA ATCTCTCAAA
AAACCTGTGA TTGCCGATAA TGGTTCACTG GTGGCGGTGG AAGTGGCGCC GGACAGAGGG
GATAGCCGTA CGTTGGTGCA TTCAACCACA GGTAAACGCC AATTGAGCGT TGCCGGTGCT
TCAAAGCCTG TCGTCAGTGC CGATGGCCGG TATGTGGCCA TGGTGCTGGA ACCATCGCTG
CTTGAAAAAG AAACCAGCGA TGCCAAAGCC CGTAAAAAAT TGAAAGACGG CATGGTATTG
GTTGAAGTTG CCACTGGTAA AGAGCAGCGT TTTTCCCGGG TGAAGGAGTT TACCTTCAAC
GATGCCGGTA CTGTGCTTGC TGTCTGGTTT GAGGCCGAGG AAGACAAAAA AGATAAGGCC
GATGATAAGG CCCCCGATAA TGCTTCGGTG GCCGAAGCTA AGCCCCAAAC TGCGGAAGAC
AACCTTAAAA AGCCCAAGGT GGATAAGGCC GACAAGGGCT CGCCACTGAC GCTGATAGCC
CTCAATAGTG GCAAACAGCT TGAATTACAA GATATCACTG CCTATGCCTT TGACAAGAAA
GGTAAATCAG CCGCGGTGTT GGTAAATGAT GTTGCGCAGG CTAAGCATCA ACTGTTGTCG
GTTACCCTGA GTGACCTGAG CCAGCAACAA AAGTACAGCT CTGAATCTGA GCAACTGGGG
GCATTAGCTA TCAACCACGA TGGCAGCCAT ATTGCCTTCA GCGCCGGAGT AGCCGCCGAC
AAGGTGGATG AGCGCCAGTA CCGTCTTGGA CTGGTGAACG ACAAGGGGGA TGTCCGCTTT
GCCATGCATC CGGATGCCTG GGTGTTGAAT CAATACTCGC AGCTGTCGTT TTCCGAAGAC
GGTGAGAGGC TGTATTTCGG CACAGTGCCC GAAGTCAGCA AGGTGCTGAG CCTGCAAAAA
TTCAGCGATG AGGCGAGTCT GTATGACACT GCGACTATCC GCGACAGCCG CGGTCTTAAG
CTATGGCACG GTGATGACCC GCGGATTAAG CCCCATGAGA TCAAGACCTA TGATAAGTTG
AAAAAGCAGA CCCTGCTGGC CGTATGGCAC CTGGCAGGCA ATCAGGTGGT ACAGCTTGCC
ACCCCTGAAG TGCCGGAAGC CAAACCCATA GAGTACGGCC GCTTTGTACT GGGCAGTTCC
AGTGAACCTT ACCTGAAAGA AATCACCTGG GCCGGGTTTT ACAGCGATTT TTATCTTATC
GATACCCTGA GTGGGGAGCG CACCGCAGTG GCGCTGCGTC AGCCATCAAA CAGTGAACCC
AACATTTCGC CCTATGGTCG CTATGCCGCG TATTTCCGGG AAGGGCAGGT ACAGCTCCTG
AATGTAGCTT CAAAGCAGCT GCGCGTGTTG AATGCCAATC TTGACGTGCC ATTTGCCGAT
GAAGACCATG ACTACCCCTC CGATGCGCCG GGTTATGGCT TTGGTCCCTG GCTGGCTGAT
GAAAGTGGTC TGCTGGTTTA CGACAAATAC GATATCTGGC AATTTGCTGC GGCAGATGCC
AAGGCTCTGA AACTCACCTC GGGAAGAGAC AAGGGCATCA GTTATCGGGT TGAGGGTCTG
TATCAGGACA AAAACCAGGC GCCTGCCACG GTTAACACCA GTCAGAGTTT GCTTGTGAAA
GGCTACAATG AGCGCACCAA GGCCGATGGT TTCTACCGGG TAACCCTGGG GAAAGATGGC
CTTAAAACCC TGCATGCCAA AGAGGAAAAA CTCAGCGTAC TGGGCCGCGC CAAGCATGCC
GACACCCTGG TTTTCAGCCG TGAGCGTTAC GACCGTTTCC CCGACCTCTA CAGCGCCGAT
GTGCTGGAGG TTGACGATGC CCGCCGTTTG ACTGAGCTTG ATGCTCAGCG CAGCAAATTT
GGCTGGGGTA AGGCTGAACT GGTGCACTGG ACCAATACCG ACGGTAAGCC GCTCGATGGC
GTGCTTATCA AACCTGCGGG TTATGAGGCT GGCAAGCGTT ACCCTGTGCT GGTGTATTTC
TATCGCTTTA TGAGCGACCG ACTGCATGCC TTCCCGTCGA TGAACATCAA CCACAGGCCG
AATTTTGCCT GGTACGCCAA CCAGGGTTAC GCCATCTTCC TGCCGGATAT CCGTTTTGAG
GTGGGTTATC CGGGTAACAG CTCGGTGCAG GCGTTGACCT CGGGCGTTCA AAAGCTGATT
GAAATGGGGA TTGCCGAACC CACGGCCGTG GGCATTCAGG GCCACTCCTG GGGCGGTTAT
CAAACGGCCT TTGCCGTGAC TCAGACTCAC ATCTTTGCCG CTGCCGTAAC AGGAGCACCC
GTAGGCAATA TGACCAGTGC CTACAGTGGT ATTCGTCATG GCACCGGATT GGCGCGTCAA
TTCCAGTATG AAACCGGCCA AAGCCGTATC GGCGAGAGTC TGATGCAGGC GCCGCTGAAA
TACGTGGAAA ACTCGCCGGT ATTTTATGCC GACCGTATCA AGACACCCAT GATGATCATG
TTCGGTGACA AGGACGATGC AGTGCCCTGG GAGCAGGGGG TTGAGTTGTA TCTGGCCATG
CGCCGTGCCG GTAAGGATGT GGTGTTGCTG CAATACGAGG GTGAGCCTCA CCATCTTAAG
CAATACGGTA ACAAGCTGGA CTACAGCATT CGTATGAAGG AATACTTCGA CCACTACCTT
AAAGGTGCCA AGGCGCCCGC GTGGTTGGAG CAGGGCGAAC CCTATCGCGA GTACGCCAAA
GAAGACTGA
|
|---|
| Protein sequence | MKPSALFCAL ASAASLSLPA LAAPSGNMQV QDIMKFESLK KPVIADNGSL VAVEVAPDRG
DSRTLVHSTT GKRQLSVAGA SKPVVSADGR YVAMVLEPSL LEKETSDAKA RKKLKDGMVL
VEVATGKEQR FSRVKEFTFN DAGTVLAVWF EAEEDKKDKA DDKAPDNASV AEAKPQTAED
NLKKPKVDKA DKGSPLTLIA LNSGKQLELQ DITAYAFDKK GKSAAVLVND VAQAKHQLLS
VTLSDLSQQQ KYSSESEQLG ALAINHDGSH IAFSAGVAAD KVDERQYRLG LVNDKGDVRF
AMHPDAWVLN QYSQLSFSED GERLYFGTVP EVSKVLSLQK FSDEASLYDT ATIRDSRGLK
LWHGDDPRIK PHEIKTYDKL KKQTLLAVWH LAGNQVVQLA TPEVPEAKPI EYGRFVLGSS
SEPYLKEITW AGFYSDFYLI DTLSGERTAV ALRQPSNSEP NISPYGRYAA YFREGQVQLL
NVASKQLRVL NANLDVPFAD EDHDYPSDAP GYGFGPWLAD ESGLLVYDKY DIWQFAAADA
KALKLTSGRD KGISYRVEGL YQDKNQAPAT VNTSQSLLVK GYNERTKADG FYRVTLGKDG
LKTLHAKEEK LSVLGRAKHA DTLVFSRERY DRFPDLYSAD VLEVDDARRL TELDAQRSKF
GWGKAELVHW TNTDGKPLDG VLIKPAGYEA GKRYPVLVYF YRFMSDRLHA FPSMNINHRP
NFAWYANQGY AIFLPDIRFE VGYPGNSSVQ ALTSGVQKLI EMGIAEPTAV GIQGHSWGGY
QTAFAVTQTH IFAAAVTGAP VGNMTSAYSG IRHGTGLARQ FQYETGQSRI GESLMQAPLK
YVENSPVFYA DRIKTPMMIM FGDKDDAVPW EQGVELYLAM RRAGKDVVLL QYEGEPHHLK
QYGNKLDYSI RMKEYFDHYL KGAKAPAWLE QGEPYREYAK ED
|
|---|
| |