| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2405 |
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| Symbol | |
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| ID | 4604654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2889190 |
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| End bp | 2891445 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781802 |
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| Product | sensory box protein |
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| Protein accession | YP_928279 |
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| Protein GI | 119775539 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.547326 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGAAT GGTTTGTTGA TCACACCCGA TTGGGGGCTG GGCTTTGGAC CAGCCGAGAT
GAATGCCTTT GGCAACAGAA CGCCGATGGC GACCCCATGA CCACTTTGAC AGTCAGCGGT
ATCGGGGGCG AGCTGAAGCT CTGTTTACAT GGAGATGTAC TCACTGACGG CCATCAACTG
CTGGCAAAAG CATTGCTGGA AGGTGTGGCT GCCGCACTTG GCGGCGGAGA GTCCGGTCTG
CTGCAAAGCT TTATGGATGC CTTTGACGAA CACATCTGGA TAAAGGATGC TGAGGGGCGT
TACCGATTTA TTAACCAGAG TACCTTGGTG TCGTGGGATT TAAGCCCGGC GCAGATATTG
TCACGTAAAG ATGCTGAGGT CTTTCCCGAT CGTGTTTCCG AGTACACAGA CACAGATCTC
AAGGCGGTCA AAGAAGGCCA TCCCATTGTC GTCGCCGAAT GTATTGACCG TTCGTTGGAT
AAGGGCAATA TCTGGCTCGA AACCATCAAA GCGCCCATGT ACGACATGGA TGGCAGGCTA
CTAGGGGTGA TAGGTACGAC CCGGGACATT GCCAGGTACA AAGCTGCCGA AGAGCAATTG
TTTCTGACCT CCAAGGTGTT TGAAAATGCC ATTGAGGGGG TGATGATCAC CGATTCCAAT
GGGATTATCA CCGAGATAAA TGGCGCCTTT GAAACCATCA CGGGTTACAG CCGTGATGAA
GTGATTGGCA AAACTCCCAA ACTGCTTAAT TCTGGACGCC ATGAGCGGGA CTTTTTTGAA
AATCTCTGGC GGGCATTGAA AACCCAGGGG CACTGGCACG GTGAGATTTG GAATCGCCGC
AAAAATGGCA CCCTGTTTGC CGAGCAAACC AGCATCAGCG CCGTGTACGG TGAAGATGGG
CAAGTCCGCT GCTTTGTGGC GGTGTTTTCC GATATCTCCC TGCTTAAACA AACCGAGGCC
GAAGTTGCTC AGCTTGCCTG GCACGACCCG CTCACCCGCT TGCCCAATCG CTCCAAACTC
ACCACCATCA GCCAGCAGCA AATCAAGCTC GCCGCCAACC GAAAAACCCG ATTGGCGCTG
CTGCTTATCG ACGTGGACCT CTTCAAACAC ATTAATGACA GTTTTGGGCA CCTCGCAGGC
GACAAAGTGT TGCTGTCGTT ATCCGAGCGT CTCGCCGCAC TGCTTGGCGC CGAAGATACT
CTGGCCCGAA TTGGAGGCGA TGAGTTTGTA TTGCTGACAC AGGTGAGACG CCGGGACGAC
ATTCCTGTGA TCCTGTCTGC CATTCAAAGA GCGTTTGATA CCAGCTTCGA TACCAGTGAG
GGCGAGTCGG TTCGCCTCAG TGCCAGTATC GGTATTGCTG TGTATCCCGA CGATGGCGAT
AACCCGGACA CCTTGCTGAA AAACGCCGAT GCCGCCATGT ATCGGGCCAA GCAGCAAGGC
CGTAATCGCC ATGCGTTTTA TACAGAGCAA ATGACGCAAA GTTCCATGCA GCAATTGCGG
CTGCAAACTG CCCTCAGAGG CGCGGTGAAA AACAGCGCAC TATCGTTGGT TTACCAACCC
AAAATCAATT TGCGTACCCG TAAACTCATT GGCGTAGAGG CCCTGTGTCG GTGGACAGAT
CATGAGCTCG GGGTTGTGTC TCCGGCAGAA TTTATTCCGG TTGCCGAGTC CATTGGCTTG
ATGCCGGAGA TAGGCCTGTG GGTATTGAAA GAGGCCTGTC GCCAGGCGCG AATTTGGCGT
GACCAGGGGC TTAACCCCGG TCGCATGGCG GTAAATGTGT CGGGTTCTCA GCTTACCGGC
GATAACTTTG CCGACAGTGT CGCCAGAGTG CTCACACAAA CAGGGCTCTC CCCGGACGCC
CTTGAGCTGG AAATCACCGA GTCCGTTGTG CTGGATAATC CCGCCAGTGC CATCGACACC
ATGGACAAAC TTCGTGGTAT GGGGGTCAGT CTGGCGCTGG ATGATTTCGG CACCGGGTAT
TCCTCGCTGA GTTATTTGCG CAAGCTGCCC CTTAACAAGC TCAAAATAGA TCAGTCATTC
GTCAGGGAAC TCCCCACCGA TCAGGACAGC GGCGCCATCG CCATGGCCAT TATCGCCATG
GGAGAGGCGC TGAAACTGGG CGTAATCGCC GAAGGGGTTG AAAACGAAAC GCAGGCTGAG
TTTTTGCTGC GTTTGGGCTG CACCGAGGCC CAGGGGTATC TGTTTGCCAG GCCATTATTG
GCATCAGAGC TGAAGCAGCT GCTGCAAGGC GGGTGA
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| Protein sequence | MLEWFVDHTR LGAGLWTSRD ECLWQQNADG DPMTTLTVSG IGGELKLCLH GDVLTDGHQL
LAKALLEGVA AALGGGESGL LQSFMDAFDE HIWIKDAEGR YRFINQSTLV SWDLSPAQIL
SRKDAEVFPD RVSEYTDTDL KAVKEGHPIV VAECIDRSLD KGNIWLETIK APMYDMDGRL
LGVIGTTRDI ARYKAAEEQL FLTSKVFENA IEGVMITDSN GIITEINGAF ETITGYSRDE
VIGKTPKLLN SGRHERDFFE NLWRALKTQG HWHGEIWNRR KNGTLFAEQT SISAVYGEDG
QVRCFVAVFS DISLLKQTEA EVAQLAWHDP LTRLPNRSKL TTISQQQIKL AANRKTRLAL
LLIDVDLFKH INDSFGHLAG DKVLLSLSER LAALLGAEDT LARIGGDEFV LLTQVRRRDD
IPVILSAIQR AFDTSFDTSE GESVRLSASI GIAVYPDDGD NPDTLLKNAD AAMYRAKQQG
RNRHAFYTEQ MTQSSMQQLR LQTALRGAVK NSALSLVYQP KINLRTRKLI GVEALCRWTD
HELGVVSPAE FIPVAESIGL MPEIGLWVLK EACRQARIWR DQGLNPGRMA VNVSGSQLTG
DNFADSVARV LTQTGLSPDA LELEITESVV LDNPASAIDT MDKLRGMGVS LALDDFGTGY
SSLSYLRKLP LNKLKIDQSF VRELPTDQDS GAIAMAIIAM GEALKLGVIA EGVENETQAE
FLLRLGCTEA QGYLFARPLL ASELKQLLQG G
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