| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2390 |
|---|
| Symbol | |
|---|
| ID | 4604639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2869829 |
|---|
| End bp | 2871022 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781787 |
|---|
| Product | putative transmembrane efflux transmembrane protein |
|---|
| Protein accession | YP_928264 |
|---|
| Protein GI | 119775524 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.503171 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTTAG CTCTATTTGC ATTGGCACTC AGTGCCTTTG CCATCGGCAC CACTGAATTT
GTTATCGTTG GGCTTATCCC AACCATGGCC GCCGACCTCA ATATTTCATT ACCATCGGCC
GGACTTCTGG TCAGCCTCTA CGCTCTTGGC GTGGCTGTCG GTGCGCCGGT GCTTACCGCA
CTCACCGGCA GCTGGAATCG CAAGCGCGTC CTGCTTGCGG TTATGGCGCT GTTTGTTCTG
GGCAATCTGC TGGCGTGGCA AGCCCCGGGC TATGCCACTC TGGTGGTTGC CCGCGTGCTC
ACTGGCCTGG CCCACGGGGT GTTTTTCTCC ATTGGTTCTA CCATTGCTAC TGGCCTCGTT
GCCAAAGAGA AAGCCGCCAG TGCCATCGCC ATTATGTTCA CCGGTTTAAC GGTTGCCCTG
GTCACGGGTG TTCCTCTTGG TACCTACATA GGGCAATCCT TTGGCTGGCA GGCCACCTTC
TTAATCGTGG CGATGCTCGG ATTACTTGCC CTGATTGGCA GCGCTTTTTT GGTACCAGGC
AATCTTAAGC AGCCACCTGC CACCAAGCTC TCGGCGCAGC TTAAGGTATT GACTCAACCC
CGCCTGCTGC TGGTGTACGG GATTACTGCG CTGGGATATG GCGGCACCTT TACCGCTTTT
ACTTTCCTTG CTCCCATCTT GCAGACCGAA GCTGGATTCA GCGCCGGTGC CATAGGTCTC
ATCATGCTGG TGTATGGTGT GTCCGTGGCG GTCGGCAACA TCTGGGGCGG TAAAATGGCC
GATAAGATGG GGCCGATAAA AGCCCTGACT GTAATTTTTT CAGGTTTGGC TGCCATCTTG
CTGGTGTTTA ACTTTACCGC TTATGACCCG GTACTGGCGG TGGCTACCAT TCTGGTGTGG
GGTGCCTTTG CCTTTGGCAA TGTGCCCGGC TTGCAGGTTT ACGTGGTGAC ACTGGCTGAA
AAGTATGCCC CGGATGCCGT TGATGTAGCC TCTGGACTCA ACATTGCAGC CTTTAACGTT
GGTATTGCAT TGGGTTCATG GGGCGGCGGC GAAATTGTGG CGCGCTCAGG TCTGATGCAC
ACGCCATGGG TTGGTGCTGC GGTAGTACTG CTGGCGCTTG GACTAACCCG CTTGAGTGGC
AAACTCGATA GTCGAGACGA GTCCCCCAAA CACCACTGCA CACAGGTAGC ATGA
|
|---|
| Protein sequence | MPLALFALAL SAFAIGTTEF VIVGLIPTMA ADLNISLPSA GLLVSLYALG VAVGAPVLTA
LTGSWNRKRV LLAVMALFVL GNLLAWQAPG YATLVVARVL TGLAHGVFFS IGSTIATGLV
AKEKAASAIA IMFTGLTVAL VTGVPLGTYI GQSFGWQATF LIVAMLGLLA LIGSAFLVPG
NLKQPPATKL SAQLKVLTQP RLLLVYGITA LGYGGTFTAF TFLAPILQTE AGFSAGAIGL
IMLVYGVSVA VGNIWGGKMA DKMGPIKALT VIFSGLAAIL LVFNFTAYDP VLAVATILVW
GAFAFGNVPG LQVYVVTLAE KYAPDAVDVA SGLNIAAFNV GIALGSWGGG EIVARSGLMH
TPWVGAAVVL LALGLTRLSG KLDSRDESPK HHCTQVA
|
|---|
| |