| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2389 |
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| Symbol | |
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| ID | 4606001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2868769 |
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| End bp | 2869650 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639781786 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_928263 |
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| Protein GI | 119775523 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.472096 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTACGC GATCGGATGA TTTGGAAATT TTGCTGACGG TTGTTGATTG TGGTGGCTTT
TCCGCAGCGG CCGAACTGCT CGATATCCAG GTTGCCAGGG TGTCCAGAGC CGTGAGTAAG
GTGGAGAACC AACTGGGAGT TTCCATTCTT AATCGTACAA CCAGGCGAAT AGAGCTGACT
GATGAAGGCA GGCAGTTTGT GGAGTCTGTG AGGGGCGGGC TACTGCAAAT TCAGCGCGCC
GAAGAAGATA TTATCACCCG GGGTGAAGTC CCGGCGGGCC GTCTCAGGGT GGATGCCGCC
AGCCCCTTTG TATTTCACCA ACTGGTGCCC TTAATTAAAC CGTTCAACCA GATGTACCCG
GATATCCGGA TTGAACTGAC CTCCAACGAA GGTTTTGTCG ACTTGTTGGA GAAGCGAACC
GATGTGGCCA TCCGCATAGG CCCCATGAGC GACTCCACTC TTCACGCCAG GCCTTTGGGA
CGAAGTCGTC TTTATATTGT TGCCGCCCCG GAGTATCTGG CACAGCGGGG GATCCCACGC
AAGACTGCCG ATCTTGAACA CCACGACACC ATAGGGTTTT CTGCGCCACG GTCATTAAAT
GAGTGGCCTT TGAAAGGTTT TGTGGGCTTG GAGCCGGCGC TTACCTCGAG TAATGGCGAA
ACGGTGAGGC AGTTGGCACT GTCGGGCAAC GGGATAGCCT GTTTGTCGGG TTTTATGGTC
AATAAGGATA TTGAAGAAGG GCGGTTGATG GTGTTGCTGG AAACTGAAAC GATGATGAAT
ACCGCAAGAG AGCAAGTGAA TGCGGTATTT TACAAGTCAT CCTCGGTGGC CAAACGTATC
TCGGTTTTCA TCGATTTCAT TCAGCCCAAA TTGGCGCTAT GA
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| Protein sequence | MRTRSDDLEI LLTVVDCGGF SAAAELLDIQ VARVSRAVSK VENQLGVSIL NRTTRRIELT
DEGRQFVESV RGGLLQIQRA EEDIITRGEV PAGRLRVDAA SPFVFHQLVP LIKPFNQMYP
DIRIELTSNE GFVDLLEKRT DVAIRIGPMS DSTLHARPLG RSRLYIVAAP EYLAQRGIPR
KTADLEHHDT IGFSAPRSLN EWPLKGFVGL EPALTSSNGE TVRQLALSGN GIACLSGFMV
NKDIEEGRLM VLLETETMMN TAREQVNAVF YKSSSVAKRI SVFIDFIQPK LAL
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