| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2382 |
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| Symbol | |
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| ID | 4604631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2862794 |
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| End bp | 2864743 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639781779 |
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| Product | GGDEF family protein |
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| Protein accession | YP_928256 |
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| Protein GI | 119775516 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0512687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTGTT ACCGTGCTGC ACTCGTGTGT GCGCTTTGGC TTCTTTTGCC GTGGCTTGCC
ATGGCAAATG GAGACTATCG CGCAATGCTG AATGAGCTTA TAAACATGCA GCACGGTCCT
TCTGAAAGAA AAACAGATCT CATTAATACC TTAAAGACAG CCGAAAAGGC GCTCGATGCG
GAAGAACTCG GTCAGTTGAA AATGATCCTC GGCAGAGAGC AATTATATGA GGGGGCCTAT
CAAGCGGGTG TGAATGATCT GAAGGTGGCC GAGTCACAAT TGTTTTCATC CCGACATTTG
CATTTGGTTT ATGGCTACCT TGCCACAGGT TATCAGCTGC TGGGTGATTA CGAATCCTCC
CTTCGTTACC TAAAACTTGG GCTTGAACTG GTAAAAACAG TTTCAGACAA AGACGTACAG
CGCAACGCGT ACATTCGGGC GGCGAGTCTC TTCTACCAGC TCGGCTTTTA TGAAGAGGTG
GGGCTTTATG CCCAGAGGGC GCTTCAGCTA GCTGATGATG CCAATACCAA GGATATCTGT
TACGCCAACC TCTATATTGC CGCTTATATT CATGAGTCGG GAGAACTGCC CCGTGCTGCA
GAGGCGTTCC AGCGAACGGG CGATTATTGT CAGGAGCATG GCTGGCGGCT CATTACCGTG
ATGACCATTA AGTCACGTGG ACTTATCAGC CATGAGTCAA ACCTGATTGA GGATGCCATC
ACCCTGATGG AGCAGGCGCT GGCAGAGTAC CGCACCCTTG GTTTTCAGCT GGAGATTGCC
AGTACCCAAA GCGCATTGGC AAAGGCCTAT CTCGACATTG GCGATTGGGA GAAGGCGGAG
GCTGCCGCTG TCGAAGCTAT CGACAGCAAA GGTGCCGACA ATAAGGCCCT GAAAGACGCC
TGGTATGTGA TGGCCACACT GAAGGCGAGA AGTAACGACT TTGTGACTGC CTATGAAGCC
CAAAAGCATG AAAATCATTA TGCCAATGAA CTGCTGAACG AAACCAAGGC CCGTGAAATG
GCCTACCAGG CGGCCAAGTT TAATTTTGTT GAGCAGCAGC GGGAAATCGC TTTATTGAAC
AGTGAAAGGG ACAGCTATCT GGTCAGGCAG GAAACTATCT CCCGGGAGCA TTCCGGGTCT
TTGATGATTT CAACTGTGCT GGCGGGTATT ACCTTATTTT TATCTGTGTT TCTGGCAACC
GGTTTGTCTC AACGTAACAA GTACATGCGC CTGGCACAGC GCGACGGCCT GACCGGAACC
TACAATCGTG CCACGGGGCA GGAAAAAGGT GAAAATGCGC TGATTGGCTG TATGGCGCGA
GGTGAGCCGA CGGCGGCTGT CTTGCTCGAT TTGGATAATT TCAAGCGGAT CAATGATGAG
TTCGGCCATG CTACCGGCGA CTGGACCCTG AAAAAGGTCG TGGAAGTGAT TCGGCCACAG
TTGGCCGATG ACCATATTCT GTGCCGCTTT GGCGGTGAGG AGTTTATGTT GATCCTGCCC
GGGCTTTCGG GCGCACAGGC GGTGGAAGTG GCTGAGCGTT GCCGAGAGGC CATTGCCGGG
GTCAATACCC ATTATTCGGG TCACAGCTTT AAACTGACCG CCAGTTTTGG GGTGACCGAG
TGGCAGCATG GTGATTTAAG CCTTGACCCC ATGATCAAGC GCGCCGATTT GGCCTTATAC
CGGGCCAAAC ATCTGGGGCG TAACCGGGTC GTCAGCTATG GCTTTGCGGA GCTTGAGGGA
GGCAATAATC AGTCTTTTGC CGATACCCAG GAAAACTCGT CAGCGCAAAC CAGAAATCAA
ACACCATCAT CAATCAGCAC TGCCCAATCG CCTGCGGCGT CAGAGGGTAA AATCGAAGAA
GAGTCTTCGA AAGTGAGCGC TGCTTATGCG GTATCCCCGG AGCAATCCCA GGTCCTCGCT
GAGTCGCCTG ATAAGGTCGC AACACCCTAA
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| Protein sequence | MTCYRAALVC ALWLLLPWLA MANGDYRAML NELINMQHGP SERKTDLINT LKTAEKALDA
EELGQLKMIL GREQLYEGAY QAGVNDLKVA ESQLFSSRHL HLVYGYLATG YQLLGDYESS
LRYLKLGLEL VKTVSDKDVQ RNAYIRAASL FYQLGFYEEV GLYAQRALQL ADDANTKDIC
YANLYIAAYI HESGELPRAA EAFQRTGDYC QEHGWRLITV MTIKSRGLIS HESNLIEDAI
TLMEQALAEY RTLGFQLEIA STQSALAKAY LDIGDWEKAE AAAVEAIDSK GADNKALKDA
WYVMATLKAR SNDFVTAYEA QKHENHYANE LLNETKAREM AYQAAKFNFV EQQREIALLN
SERDSYLVRQ ETISREHSGS LMISTVLAGI TLFLSVFLAT GLSQRNKYMR LAQRDGLTGT
YNRATGQEKG ENALIGCMAR GEPTAAVLLD LDNFKRINDE FGHATGDWTL KKVVEVIRPQ
LADDHILCRF GGEEFMLILP GLSGAQAVEV AERCREAIAG VNTHYSGHSF KLTASFGVTE
WQHGDLSLDP MIKRADLALY RAKHLGRNRV VSYGFAELEG GNNQSFADTQ ENSSAQTRNQ
TPSSISTAQS PAASEGKIEE ESSKVSAAYA VSPEQSQVLA ESPDKVATP
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