| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2376 |
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| Symbol | |
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| ID | 4604625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2853580 |
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| End bp | 2855325 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639781773 |
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| Product | GGDEF family protein |
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| Protein accession | YP_928250 |
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| Protein GI | 119775510 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.603107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.125549 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACCGT TACAAAGCCT GAAGCGCAAA CTCACTATCC TGTTTTACCT GATTTCTTTA
ATGACTGTCG GGATAGGGAT TATTGCCGTT TCTCTTTCAC AGTCGCTCAA ATTACAGGTG
GATGCCATGG TGGCCAACGA CCTGGCCGAG GTTCGTTTGG CCATGTCCCA GGTGAGGCTT
GCCGAGCAAT TACAAACGAC CGTCGCCAAG CTTAAAAATG TCGTCGATGA TACGGAGCGA
AGCGACCTGT TAAGAGAGCT TTCGGCCCAG TGGCAGCAAT TATTGAATGG CACTCAAAAG
CTTGGCAGCT TTCACCACAG TGACGACCAA ACATCGGCAC TTGGCGAGCA GGCGATAATG
CAACAGCAGA TGCTGAGCAC ACTGGCTCGA CTCGATGAGT TCAGTAGCCA GGCGCTGCTA
TCCCGATTAC AGGTAGCCAA CCTTATTCAG AATCTCAATG ACATGCAGGC TGGATTTGTC
AGGGAGTACA GAGACAACCT CGGAAACCTG GATGAACGTG CCCGGGATGC CATGACGCAG
GGTAATATTC CGGCCCTTAA TTCGCTGCTT TCAGACCATC ACATCAATTC AGAGTTTTTG
CATCTGGGTG AGCGCCTGTT TGCCACCTTG CTGCGAACTA CAGAGCATTT ACCACCAGTG
GAAATCAATT CCCTGCAGCG CCAAAGTCTG AGGCTTTTAC GGGAAATGGA GCCCTTGGTA
AGTCAGCTCA ATGACAGGGA GTCGGCGGAC AATTGGCTGG CACAGCTGAA ACATCAAATG
GTCGGCAGTG ACAATCTGTT TGAGCTCAGT CGAAACCAGC AAAAACGCCG TGCGGTGGCA
GGTACGCATT TTGACGAGCA TGCCAACATG GCCCGCCAGA GTGCCGACTT CTTCCAGGAA
GAGTTCCGTC AAAGGGATGA AAACATCCGC AATGCCAGCC TGGACCTCAA ACGGGATGCC
ATGGCATTTT TGGTATTGAT TGTCGTGGCA GGTATCGTCT ATTGCGGTCT GATTTGGCTC
ACCAACTGGC ACTTTATTGC CAAGGGGATC ATCAACCCCG TCATTGCCAC GCGCAATGCC
ATGAATGACA TAGTCAATGA GAAGCTCGAT ACCGTCCTGC CCAAGGCCGA CAATTTGGAG
CTTCAGCAAA TGGTCAGCTC CCTCGAAACG CTCAAGAGCT ACGCCGCTCA AGTGAAAGCC
ATCTCAGAAA TCGACGGTCT GACCGGCATT CACAACCGCC GCTACTTTGA CCTGAAGCTC
GACGCCGCGC TTGCCCGTCA CCAAAAGGAA CACATCCACC TCGGGCTTAT CATGTTTGAT
CTGGATTATT TTAAACAATT CAATGACACC TATGGCCATC TGGCCGGGGA TCAATGTCTC
AAGGATGTGG TGAACCGGAT AAAACAGCTG TTGCCCAATG GCAATGAGAC CTTTGCCCGC
TATGGCGGCG AGGAATTCGT CTTATTAGTG CAAGGCTACG ACTGGCGTGC TTTACGACAG
ATTGCCGAAG ACATTCGTGA GAGTATTGTC ACCCTGGCAA TTCCCCATCG CCAGACCCCT
CAAGGTATAG CGACTCTGAG TTTGGGCATC GCACACCTGC CACAGGATCA ACGGGCCACG
GCACAGGAGC TGATTGCAAC CGGCGATACC GCACTGTACC GGGCAAAACG CCGTGGCAAA
AACTGTTGTG AATTCATGGT TGTCAGTACA AGCTACGAGC CCAAACCGGG CGATCCCTTG
ATTTAA
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| Protein sequence | MRPLQSLKRK LTILFYLISL MTVGIGIIAV SLSQSLKLQV DAMVANDLAE VRLAMSQVRL
AEQLQTTVAK LKNVVDDTER SDLLRELSAQ WQQLLNGTQK LGSFHHSDDQ TSALGEQAIM
QQQMLSTLAR LDEFSSQALL SRLQVANLIQ NLNDMQAGFV REYRDNLGNL DERARDAMTQ
GNIPALNSLL SDHHINSEFL HLGERLFATL LRTTEHLPPV EINSLQRQSL RLLREMEPLV
SQLNDRESAD NWLAQLKHQM VGSDNLFELS RNQQKRRAVA GTHFDEHANM ARQSADFFQE
EFRQRDENIR NASLDLKRDA MAFLVLIVVA GIVYCGLIWL TNWHFIAKGI INPVIATRNA
MNDIVNEKLD TVLPKADNLE LQQMVSSLET LKSYAAQVKA ISEIDGLTGI HNRRYFDLKL
DAALARHQKE HIHLGLIMFD LDYFKQFNDT YGHLAGDQCL KDVVNRIKQL LPNGNETFAR
YGGEEFVLLV QGYDWRALRQ IAEDIRESIV TLAIPHRQTP QGIATLSLGI AHLPQDQRAT
AQELIATGDT ALYRAKRRGK NCCEFMVVST SYEPKPGDPL I
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