| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2365 |
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| Symbol | ispG |
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| ID | 4604614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2842072 |
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| End bp | 2843190 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781762 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_928239 |
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| Protein GI | 119775499 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00190714 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.379553 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAACG AAAATCCCAT CAAGCGTCGC CCCTCTACCC GCATTTACGT CGGTAATGTG
CCTATTGGTG ACGGCGCGCC TATTGCTGTC CAGTCCATGA CCAACACCCG CACCACAGAT
GTGGCTGCAA CAGTGGCGCA AATTCGGGCA CTGGAAAATG TTGGCGCCGA CATAGTACGT
GTCTCAGTGC CTACCATGGA TGCAGCCGAA GCCTTCAGGC AGATTAAGCA GCAGGTAAAA
GTGCCTCTGG TGGCCGATAT CCACTTTGAC TACCGTATCG CCCTTAAAGT GGCTGAGTAC
GGTGTGGATT GTCTGCGTAT CAACCCGGGT AATATTGGTA ACGAAGAGCG CATTCGTGCC
GTGGTTGACT GTGCCCGTGA CAAAAACATT CCCATCCGTA TCGGAGTGAA TGGCGGCAGT
CTCGAAAAAG ATCTGATGGA CAAGTACAAG GAGCCAACGC CTGAGGCGCT GCTCGAGTCC
GCTATGCGCC ATGTGGACAT TCTTGACCGC CTCAACTTTG ACCAGTTCAA GGTGAGCGTG
AAGGCGTCAG ACGTTTTCCT GGCGGTGGAG TCTTACCGAC TGCTGGCCAA ACAAATCAAA
CAGCCGCTGC ATCTTGGCAT CACTGAGGCC GGTGGCGCCC GCGCCGGTGC GGTGAAATCC
GCTGTTGGTC TGGGTATGTT GCTCGCCGAG GGCATTGGCG ACACCCTGCG TATTTCCCTG
GCGGCCGATC CGGTTGAAGA AGTGAAAGTG GGTTTTGATA TCCTCAAATC ACTGCGTATC
CGCTCCCGCG GTATCAATTT TATCGCCTGT CCTTCCTGCT CGCGTCAGGA ATTTGATGTT
ATCTCTACCG TTAACGAGCT TGAGAGACGT CTCGAGGACG TGACCACGGC AATGGACGTG
TCCATCATCG GCTGTGTGGT TAATGGCCCC GGTGAAGCTT TGGTGTCTCA TTTGGGGCTG
GCGGGTGGCC ACAAGAAGAG TGGTTACTAT GACGATGGTA TCCGCCAGAA GGAACGTTTT
GATAACGATA ACCTGGTGGA TGCACTGGAA GCCAAAATTC GCGCCAAGGC CAGCCTGATG
GCAAACCGGA TACCCGTGCA AGAGGGTGAT GCCGACTAG
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| Protein sequence | MFNENPIKRR PSTRIYVGNV PIGDGAPIAV QSMTNTRTTD VAATVAQIRA LENVGADIVR
VSVPTMDAAE AFRQIKQQVK VPLVADIHFD YRIALKVAEY GVDCLRINPG NIGNEERIRA
VVDCARDKNI PIRIGVNGGS LEKDLMDKYK EPTPEALLES AMRHVDILDR LNFDQFKVSV
KASDVFLAVE SYRLLAKQIK QPLHLGITEA GGARAGAVKS AVGLGMLLAE GIGDTLRISL
AADPVEEVKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV ISTVNELERR LEDVTTAMDV
SIIGCVVNGP GEALVSHLGL AGGHKKSGYY DDGIRQKERF DNDNLVDALE AKIRAKASLM
ANRIPVQEGD AD
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